CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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NFIA_021820
(
Neosartorya fischeri
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
CADNFIAG00001277
T02088_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CADNFIAP00001238
CCCH ZF
42
62
SDVPVCKAYSEGHCPLGPACP
CADNFIAP00001238
CCCH ZF
90
112
LVCKHFLKGLCKKGLKCEYLHEY
CADNFIAP00001238
CCCH ZF
115
141
RRMPECQSFSRSGYCPNGDDCLYQHVR
CADNFIAP00001238
CCCH ZF
145
164
RLPPCENYDQGFCELGPLCA
CADNFIAP00001238
CCCH ZF
169
193
RRRLCKYYLAGFCPEGKACPDAHPH
Links
Other
CCCH ZF
family RBPs
Other
Neosartorya fischeri
RBPs
23 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AFUA_1G02810
Aspergillus fumigatus
CADAFUAG00008733
N
0.983
ACLA_031620
Aspergillus clavatus
CADACLAG00003000
N
0.957
An01g05350
Aspergillus niger
CADANGAG00000527
N
0.948
gw1.00129.565.1
Aspergillus carbonarius
gw1.00129.565.1
N
0.940
ATEG_01945
Aspergillus terreus
CADATEAG00008580
N
0.931
AO090005000813
Aspergillus oryzae
CADAORAG00002768
N
0.922
AFLA_080640
Aspergillus flavus
CADAFLAG00000846
N
0.922
Pc22g25210
Penicillium chrysogenum
Pc22g25210
N
0.914
ANIA_00298
Aspergillus nidulans
CADANIAG00002417
N
0.905
CIMG_04751
Coccidioides immitis
CIMG_04751
N
0.767
TERG_06924
Trichophyton rubrum
TERG_06924
N
0.760
TRV_05203
Trichophyton verrucosum
TRV_05203
N
0.760
TEQG_00763
Trichophyton equinum
TEQG_00763
N
0.760
ARB_00210
Arthroderma benhamiae
ARB_00210
N
0.760
MGYG_02843
Microsporum gypseum
MGYG_02843
N
0.760
UREG_06760
Uncinocarpus reesii
UREG_06760
N
0.758
CPSG_07754
Coccidioides posadasii
CPSG_07754
N
0.750
PMAA_051450
Penicillium marneffei
PMAA_051450
N
0.750
PABG_06223
Paracoccidioides brasiliensis
PABG_06223
N
0.748
MCYG_05740
Microsporum canis
MCYG_05740
N
0.744
BDBG_04496
Blastomyces dermatitidis
BDBG_04496
N
0.724
HCAG_04743
Histoplasma capsulatum
HCAG_04743
N
0.715
TESG_04667
Trichophyton tonsurans
TESG_04667
N
0.711