B9GIG9_POPTR (Populus trichocarpa)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 POPTR_0001s25960 T04010_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0001s25960.1 CCCH ZF 278 300

Links

Other CCCH ZF family RBPs
Other Populus trichocarpa RBPs

54 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava23256.valid.m1 Manihot esculenta cassava23256.valid.m1 N 1.000
cassava23386.valid.m1 Manihot esculenta cassava23386.valid.m1 N 1.000
cassava23387.valid.m1 Manihot esculenta cassava23387.valid.m1 N 1.000
GSVIVG00024728001 Vitis vinifera GSVIVG00024728001 N 1.000
29681.m001358 Ricinus communis 29681.m001358 N 1.000
B9HP30_POPTR Populus trichocarpa POPTR_0009s05150 N 1.000
PK15838.1 Cannabis sativa PK15838.1 N 1.000
MDP0000699611 Malus x domestica MDP0000699611 N 0.957
ppa002251m Prunus persica ppa002251m N 0.957
Cucsa.139290 Cucumis sativus Cucsa.139290 N 0.957
MDP0000196475 Malus x domestica MDP0000196475 N 0.913
LjSGA_116351.1 Lotus japonicus LjSGA_116351.1 N 0.913
Glyma02g39210.1 Glycine max Glyma02g39210.1 N 0.913
AT5G58620 Arabidopsis thaliana AT5G58620-TAIR-G N 0.870
XM_002864537.1 Arabidopsis lyrata fgenesh2_kg.8__1801__AT5G58620.1 N 0.870
Glyma14g37330.1 Glycine max Glyma14g37330.1 N 0.870
MDP0000678327 Malus x domestica MDP0000678327 N 0.870
Glyma18g06980.1 Glycine max Glyma18g06980.1 N 0.870
LOC_Os05g03760 Oryza sativa LOC_Os05g03760 N 0.833
BGIOSIBCE017416 Oryza indica BGIOSIBCE017416 N 0.833
PK05226.1 Cannabis sativa PK05226.1 N 0.826
cassava37850.valid.m1 Manihot esculenta cassava37850.valid.m1 N 0.826
SZF2 Arabidopsis thaliana AT2G40140-TAIR-G N 0.826
MDP0000588193 Malus x domestica MDP0000588193 N 0.826
ATSZF1 Arabidopsis thaliana AT3G55980-TAIR-G N 0.826
ppa002415m Prunus persica ppa002415m N 0.826
XM_002876298.1 Arabidopsis lyrata fgenesh2_kg.5__2030__AT3G55980.1 N 0.826
Glyma11g27130.1 Glycine max Glyma11g27130.1 N 0.826
Medtr5g079420 Medicago truncatula Medtr5g079420 N 0.826
Medtr5g090250 Medicago truncatula Medtr5g090250 N 0.826
PK25575.1 Cannabis sativa PK25575.1 N 0.826
BRADI2G38247 Brachypodium distachyon BRADI2G38247 N 0.792
BRADI4G05990 Brachypodium distachyon BRADI4G05990 N 0.792
BRADI1G11760 Brachypodium distachyon BRADI1G11760 N 0.783
GSVIVG00032807001 Vitis vinifera GSVIVG00032807001 N 0.783
XM_002871484.1 Arabidopsis lyrata fgenesh2_kg.6__1236__AT5G12850.1 N 0.783
AT5G12850 Arabidopsis thaliana AT5G12850-TAIR-G N 0.783
AT2G41900 Arabidopsis thaliana AT2G41900-TAIR-G N 0.783
estExt_fgenesh1_pg.C_Chr_04.00010028 Ostreococcus tauri estExt_fgenesh1_pg.C_Chr_04.00010028 N 0.783
cassava36564.valid.m1 Manihot esculenta cassava36564.valid.m1 N 0.783
estExt_fgenesh1_pg.C_Chr_40023 Ostreococcus lucimarinus estExt_fgenesh1_pg.C_Chr_40023 N 0.783
cassava18518.valid.m1 Manihot esculenta cassava18518.valid.m1 N 0.783
B9I454_POPTR Populus trichocarpa POPTR_0012s12760 N 0.783
B9HSM9_POPTR Populus trichocarpa POPTR_0010s19520 N 0.783
MDP0000673185 Malus x domestica MDP0000673185 N 0.783
Glyma02g46610.1 Glycine max Glyma02g46610.1 N 0.783
chr2.CM0002.380.nc Lotus japonicus chr2.CM0002.380.nc N 0.783
Glyma14g01990.1 Glycine max Glyma14g01990.1 N 0.783
MDP0000320891 Malus x domestica MDP0000320891 N 0.783
POPTR_0008s06940 Populus trichocarpa POPTR_0008s06940 N 0.783
mgf012825m Mimulus guttatus mgf012825m N 0.783
SB09G002390 Sorghum bicolor Sb09g002390 N 0.750
Medtr3g028690 Medicago truncatula Medtr3g028690 N 0.739
Cucsa.368500 Cucumis sativus Cucsa.368500 N 0.739