CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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cassava23256.valid.m1
(
Manihot esculenta
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
cassava23256.valid.m1
T04761_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
cassava23256.valid.m1
CCCH ZF
276
298
VPCPEFRKGSCRQGDACEYAHGI
Links
Other
CCCH ZF
family RBPs
Other
Manihot esculenta
RBPs
54 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GSVIVG00024728001
Vitis vinifera
GSVIVG00024728001
N
1.000
PK15838.1
Cannabis sativa
PK15838.1
N
1.000
cassava23386.valid.m1
Manihot esculenta
cassava23386.valid.m1
N
1.000
B9GIG9_POPTR
Populus trichocarpa
POPTR_0001s25960
N
1.000
B9HP30_POPTR
Populus trichocarpa
POPTR_0009s05150
N
1.000
cassava23387.valid.m1
Manihot esculenta
cassava23387.valid.m1
N
1.000
29681.m001358
Ricinus communis
29681.m001358
N
1.000
MDP0000699611
Malus x domestica
MDP0000699611
N
0.957
ppa002251m
Prunus persica
ppa002251m
N
0.957
Cucsa.139290
Cucumis sativus
Cucsa.139290
N
0.957
Glyma02g39210.1
Glycine max
Glyma02g39210.1
N
0.913
MDP0000196475
Malus x domestica
MDP0000196475
N
0.913
LjSGA_116351.1
Lotus japonicus
LjSGA_116351.1
N
0.913
XM_002864537.1
Arabidopsis lyrata
fgenesh2_kg.8__1801__AT5G58620.1
N
0.870
AT5G58620
Arabidopsis thaliana
AT5G58620-TAIR-G
N
0.870
Glyma14g37330.1
Glycine max
Glyma14g37330.1
N
0.870
Glyma18g06980.1
Glycine max
Glyma18g06980.1
N
0.870
MDP0000678327
Malus x domestica
MDP0000678327
N
0.870
BGIOSIBCE017416
Oryza indica
BGIOSIBCE017416
N
0.833
LOC_Os05g03760
Oryza sativa
LOC_Os05g03760
N
0.833
PK05226.1
Cannabis sativa
PK05226.1
N
0.826
cassava37850.valid.m1
Manihot esculenta
cassava37850.valid.m1
N
0.826
PK25575.1
Cannabis sativa
PK25575.1
N
0.826
Glyma11g27130.1
Glycine max
Glyma11g27130.1
N
0.826
XM_002876298.1
Arabidopsis lyrata
fgenesh2_kg.5__2030__AT3G55980.1
N
0.826
ATSZF1
Arabidopsis thaliana
AT3G55980-TAIR-G
N
0.826
ppa002415m
Prunus persica
ppa002415m
N
0.826
SZF2
Arabidopsis thaliana
AT2G40140-TAIR-G
N
0.826
Medtr5g079420
Medicago truncatula
Medtr5g079420
N
0.826
MDP0000588193
Malus x domestica
MDP0000588193
N
0.826
Medtr5g090250
Medicago truncatula
Medtr5g090250
N
0.826
BRADI2G38247
Brachypodium distachyon
BRADI2G38247
N
0.792
BRADI4G05990
Brachypodium distachyon
BRADI4G05990
N
0.792
mgf012825m
Mimulus guttatus
mgf012825m
N
0.783
GSVIVG00032807001
Vitis vinifera
GSVIVG00032807001
N
0.783
POPTR_0008s06940
Populus trichocarpa
POPTR_0008s06940
N
0.783
Glyma14g01990.1
Glycine max
Glyma14g01990.1
N
0.783
cassava18518.valid.m1
Manihot esculenta
cassava18518.valid.m1
N
0.783
cassava36564.valid.m1
Manihot esculenta
cassava36564.valid.m1
N
0.783
B9I454_POPTR
Populus trichocarpa
POPTR_0012s12760
N
0.783
B9HSM9_POPTR
Populus trichocarpa
POPTR_0010s19520
N
0.783
MDP0000673185
Malus x domestica
MDP0000673185
N
0.783
estExt_fgenesh1_pg.C_Chr_40023
Ostreococcus lucimarinus
estExt_fgenesh1_pg.C_Chr_40023
N
0.783
AT5G12850
Arabidopsis thaliana
AT5G12850-TAIR-G
N
0.783
MDP0000320891
Malus x domestica
MDP0000320891
N
0.783
AT2G41900
Arabidopsis thaliana
AT2G41900-TAIR-G
N
0.783
estExt_fgenesh1_pg.C_Chr_04.00010028
Ostreococcus tauri
estExt_fgenesh1_pg.C_Chr_04.00010028
N
0.783
chr2.CM0002.380.nc
Lotus japonicus
chr2.CM0002.380.nc
N
0.783
XM_002871484.1
Arabidopsis lyrata
fgenesh2_kg.6__1236__AT5G12850.1
N
0.783
Glyma02g46610.1
Glycine max
Glyma02g46610.1
N
0.783
BRADI1G11760
Brachypodium distachyon
BRADI1G11760
N
0.783
SB09G002390
Sorghum bicolor
Sb09g002390
N
0.750
Cucsa.368500
Cucumis sativus
Cucsa.368500
N
0.739
Medtr3g028690
Medicago truncatula
Medtr3g028690
N
0.739