LOC_Os11g28270 (Oryza sativa)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 LOC_Os11g28270 T03971_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os11g28270.1 CCCH ZF 58 83
LOC_Os11g28270.1 CCCH ZF 103 128
LOC_Os11g28270.1 CCCH ZF 148 174
LOC_Os11g28270.1 CCCH ZF 310 336
LOC_Os11g28270.1 CCCH ZF 356 382
LOC_Os11g28270.2 CCCH ZF 20 45
LOC_Os11g28270.2 CCCH ZF 65 90
LOC_Os11g28270.2 CCCH ZF 110 136
LOC_Os11g28270.2 CCCH ZF 272 298
LOC_Os11g28270.2 CCCH ZF 318 344
LOC_Os11g28270.3 CCCH ZF 58 83
LOC_Os11g28270.3 CCCH ZF 103 128
LOC_Os11g28270.3 CCCH ZF 148 174
LOC_Os11g28270.3 CCCH ZF 310 336

Links

Other CCCH ZF family RBPs
Other Oryza sativa RBPs

50 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC_Os12g21700 Oryza sativa LOC_Os12g21700 N 0.977
BRADI4G08050 Brachypodium distachyon BRADI4G08050 N 0.970
BRADI4G19010 Brachypodium distachyon BRADI4G19010 N 0.970
GRMZM2G146514 Zea mays GRMZM2G146514 N 0.955
SB05G013190 Sorghum bicolor Sb05g013190 N 0.955
BGIOSIBCE036312 Oryza indica BGIOSIBCE036312 N 0.932
GRMZM2G100794 Zea mays GRMZM2G100794 N 0.932
Glyma09g38650.1 Glycine max Glyma09g38650.1 N 0.903
ppa005813m Prunus persica ppa005813m N 0.903
Glyma10g31370.1 Glycine max Glyma10g31370.1 N 0.896
30128.m009030 Ricinus communis 30128.m009030 N 0.896
cassava17662.valid.m1 Manihot esculenta cassava17662.valid.m1 N 0.896
PK23881.1 Cannabis sativa PK23881.1 N 0.888
Glyma18g47660.1 Glycine max Glyma18g47660.1 N 0.881
chr1.CM1413.200.nd Lotus japonicus chr1.CM1413.200.nd N 0.881
Glyma20g36140.1 Glycine max Glyma20g36140.1 N 0.873
cassava12890.valid.m1 Manihot esculenta cassava12890.valid.m1 N 0.867
cassava12889.valid.m1 Manihot esculenta cassava12889.valid.m1 N 0.867
LOC_Os01g68860 Oryza sativa LOC_Os01g68860 N 0.852
GRMZM2G107491 Zea mays GRMZM2G107491 N 0.851
Sb03g043810 Sorghum bicolor Sb03g043810 N 0.851
Medtr7g089530 Medicago truncatula Medtr7g089530 N 0.851
ZFN1 Arabidopsis thaliana AT3G02830-TAIR-G N 0.843
GRMZM2G087032 Zea mays GRMZM2G087032 N 0.843
XM_002882207.1 Arabidopsis lyrata fgenesh2_kg.3__226__AT3G02830.1 N 0.843
ZFN3 Arabidopsis thaliana AT5G16540-TAIR-G N 0.842
mgf007299m Mimulus guttatus mgf007299m N 0.837
XM_002871677.1 Arabidopsis lyrata fgenesh2_kg.6__1644__AT5G16540.1 N 0.835
BRADI2G58770 Brachypodium distachyon BRADI2G58770 N 0.828
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.813
MDP0000178517 Malus x domestica MDP0000178517 N 0.812
BGIOSIBCE004747 Oryza indica BGIOSIBCE004747 N 0.799
BGIOSIBCE034418 Oryza indica BGIOSIBCE034418 N 0.783
MDP0000665604 Malus x domestica MDP0000665604 N 0.754
MDP0000577111 Malus x domestica MDP0000577111 N 0.754
gw1.151.82.1 Selaginella moellendorfii gw1.151.82.1 N 0.741
cassava29576.valid.m1 Manihot esculenta cassava29576.valid.m1 N 0.731
29726.m004014 Ricinus communis 29726.m004014 N 0.724
GSVIVG00017774001 Vitis vinifera GSVIVG00017774001 N 0.716
cassava35635.valid.m1 Manihot esculenta cassava35635.valid.m1 N 0.716
BRADI2G09350 Brachypodium distachyon BRADI2G09350 N 0.713
Medtr8g139280 Medicago truncatula Medtr8g139280 N 0.710
Glyma02g17250.1 Glycine max Glyma02g17250.1 N 0.710
cassava24680.valid.m1 Manihot esculenta cassava24680.valid.m1 N 0.710
29620.m000559 Ricinus communis 29620.m000559 N 0.709
cassava19141.valid.m1 Manihot esculenta cassava19141.valid.m1 N 0.709
AT2G47850 Arabidopsis thaliana AT2G47850-TAIR-G N 0.704
XM_002880280.1 Arabidopsis lyrata scaffold_403761.1 N 0.704
MDP0000285251 Malus x domestica MDP0000285251 N 0.701