fgenesh1_pg.scaffold_257000036 (Physcomitrella patens)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 fgenesh1_pg.scaffold_257000036 T05262_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.scaffold_257000036 CCCH ZF 450 476
fgenesh1_pg.scaffold_257000036 CCCH ZF 488 513

Links

Other CCCH ZF family RBPs
Other Physcomitrella patens RBPs

21 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
estExt_fgenesh1_pg.C_3580026 Physcomitrella patens estExt_fgenesh1_pg.C_3580026 N 0.943
au.g10607_t1 Chlamydomonas reinhardtii au.g10607_t1 N 0.755
estExt_fgenesh2_kg.C_10578 Serpula lacrymans estExt_fgenesh2_kg.C_10578 N 0.741
fgenesh2_pg.C_scaffold_32000041 Selaginella moellendorfii fgenesh2_pg.C_scaffold_32000041 N 0.741
e_gw1.45.79.1 Selaginella moellendorfii e_gw1.45.79.1 N 0.741
e_gw1.1.2331.1 Agaricus bisporus e_gw1.1.2331.1 N 0.741
CC1G_04402 Coprinopsis cinerea CC1G_04402 N 0.741
0300010273 Ostreococcus tauri 0300010273 I 0.736
gw1.1.1133.1 Micromonas pusilla gw1.1.1133.1 N 0.736
fgeneshNG_pg.scaffold_32000024 Naegleria gruberi fgeneshNG_pg.scaffold_32000024 N 0.722
estExt_fgenesh1_pm.C_10824 Schizophyllum commune estExt_fgenesh1_pm.C_10824 N 0.722
estExt_fgenesh2_pg.C_10793 Laccaria bicolor estExt_fgenesh2_pg.C_10793 N 0.722
SPPG_04528 Spizellomyces punctatus SPPG_04528 N 0.722
estExt_genemark.C_30534 Pleurotus ostreatus estExt_genemark.C_30534 N 0.722
fgeneshCV_pg.C_scaffold_14000116 Chlorella vulgaris fgeneshCV_pg.C_scaffold_14000116 I 0.722
fgenesh1_pg.C_scaffold_11000103 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_11000103 N 0.722
estExt_fgenesh3_pg.C_770054 Postia placenta estExt_fgenesh3_pg.C_770054 N 0.722
gw1.3.668.1 Ostreococcus RCC809 gw1.3.668.1 I 0.717
gwEuk.3.753.1 Ostreococcus lucimarinus gwEuk.3.753.1 I 0.717
CMA121C Cyanidioschyzon merolae CMA121C N 0.704
PTTG_07763 Puccinia triticina PTTG_07763 N 0.704