CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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au.g10607_t1
(
Chlamydomonas reinhardtii
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
au.g10607_t1
T04738_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
au.g10607_t1
CCCH ZF
777
803
YKTEMCRSWQETGACRYGSKCQFAHGP
au.g10607_t1
CCCH ZF
815
840
YKTEHCRTFSATGVCQYGNRCRFIHT
Links
Other
CCCH ZF
family RBPs
Other
Chlamydomonas reinhardtii
RBPs
36 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
gw1.4.464.1
Volvox carteri
gw1.4.464.1
N
0.836
fgenesh2_pg.C_scaffold_32000041
Selaginella moellendorfii
fgenesh2_pg.C_scaffold_32000041
N
0.778
e_gw1.45.79.1
Selaginella moellendorfii
e_gw1.45.79.1
N
0.778
gw1.1.1133.1
Micromonas pusilla
gw1.1.1133.1
N
0.774
gw1.3.668.1
Ostreococcus RCC809
gw1.3.668.1
I
0.774
0300010273
Ostreococcus tauri
0300010273
I
0.774
fgenesh1_pg.scaffold_257000036
Physcomitrella patens
fgenesh1_pg.scaffold_257000036
N
0.755
gwEuk.3.753.1
Ostreococcus lucimarinus
gwEuk.3.753.1
I
0.755
CC1G_04402
Coprinopsis cinerea
CC1G_04402
N
0.741
DDB_G0285973
Dictyostelium discoideum
DDB_G0285973
I
0.741
fgeneshCV_pg.C_scaffold_14000116
Chlorella vulgaris
fgeneshCV_pg.C_scaffold_14000116
I
0.741
estExt_fgenesh2_kg.C_10578
Serpula lacrymans
estExt_fgenesh2_kg.C_10578
N
0.741
estExt_fgenesh1_pg.C_3580026
Physcomitrella patens
estExt_fgenesh1_pg.C_3580026
N
0.736
AMAG_15989
Allomyces macrogynus
AMAG_15989
N
0.722
AMAG_06814
Allomyces macrogynus
AMAG_06814
N
0.722
estExt_fgeneshDP_kg.C_230001
Dictyostelium purpureum
estExt_fgeneshDP_kg.C_230001
I
0.722
EDI_287240
Entamoeba dispar
EDI_287240
N
0.722
EIN_295900
Entamoeba invadens
EIN_295900
N
0.722
CMA121C
Cyanidioschyzon merolae
CMA121C
N
0.722
estExt_fgenesh2_pg.C_10793
Laccaria bicolor
estExt_fgenesh2_pg.C_10793
N
0.722
estExt_fgenesh3_pg.C_770054
Postia placenta
estExt_fgenesh3_pg.C_770054
N
0.722
ZFP36
Macropus eugenii
ENSMEUG00000010317
I
0.722
estExt_fgenesh1_pm.C_10824
Schizophyllum commune
estExt_fgenesh1_pm.C_10824
N
0.722
EHI_008770
Entamoeba histolytica
EHI_008770
N
0.722
estExt_genemark.C_30534
Pleurotus ostreatus
estExt_genemark.C_30534
N
0.722
fgenesh1_pg.C_scaffold_11000103
Phanerochaete chrysosporium
fgenesh1_pg.C_scaffold_11000103
N
0.722
gw1.8.374.1
Chlorella NC64A
gw1.8.374.1
N
0.717
gw1.14.301.1
Coccomyxa C 169
gw1.14.301.1
N
0.717
ENSORLG00000008378
Oryzias latipes
ENSORLG00000008378
I
0.704
ZFP36
Tetraodon nigroviridis
ENSTNIG00000000183
I
0.704
e_gw1.1.2331.1
Agaricus bisporus
e_gw1.1.2331.1
N
0.704
fgenesh2_pg.scaffold_13000206
Monosiga brevicollis
fgenesh2_pg.scaffold_13000206
N
0.704
EFA80829.1
Polysphondylium pallidum
EFA80829.1
I
0.704
PTTG_07763
Puccinia triticina
PTTG_07763
N
0.704
SPPG_04528
Spizellomyces punctatus
SPPG_04528
N
0.704
ENSGACG00000008351
Gasterosteus aculeatus
ENSGACG00000008351
I
0.704