au.g10607_t1 (Chlamydomonas reinhardtii)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 au.g10607_t1 T04738_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
au.g10607_t1 CCCH ZF 777 803
au.g10607_t1 CCCH ZF 815 840

Links

Other CCCH ZF family RBPs
Other Chlamydomonas reinhardtii RBPs

36 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
gw1.4.464.1 Volvox carteri gw1.4.464.1 N 0.836
fgenesh2_pg.C_scaffold_32000041 Selaginella moellendorfii fgenesh2_pg.C_scaffold_32000041 N 0.778
e_gw1.45.79.1 Selaginella moellendorfii e_gw1.45.79.1 N 0.778
gw1.1.1133.1 Micromonas pusilla gw1.1.1133.1 N 0.774
gw1.3.668.1 Ostreococcus RCC809 gw1.3.668.1 I 0.774
0300010273 Ostreococcus tauri 0300010273 I 0.774
fgenesh1_pg.scaffold_257000036 Physcomitrella patens fgenesh1_pg.scaffold_257000036 N 0.755
gwEuk.3.753.1 Ostreococcus lucimarinus gwEuk.3.753.1 I 0.755
CC1G_04402 Coprinopsis cinerea CC1G_04402 N 0.741
DDB_G0285973 Dictyostelium discoideum DDB_G0285973 I 0.741
fgeneshCV_pg.C_scaffold_14000116 Chlorella vulgaris fgeneshCV_pg.C_scaffold_14000116 I 0.741
estExt_fgenesh2_kg.C_10578 Serpula lacrymans estExt_fgenesh2_kg.C_10578 N 0.741
estExt_fgenesh1_pg.C_3580026 Physcomitrella patens estExt_fgenesh1_pg.C_3580026 N 0.736
AMAG_15989 Allomyces macrogynus AMAG_15989 N 0.722
AMAG_06814 Allomyces macrogynus AMAG_06814 N 0.722
estExt_fgeneshDP_kg.C_230001 Dictyostelium purpureum estExt_fgeneshDP_kg.C_230001 I 0.722
EDI_287240 Entamoeba dispar EDI_287240 N 0.722
EIN_295900 Entamoeba invadens EIN_295900 N 0.722
CMA121C Cyanidioschyzon merolae CMA121C N 0.722
estExt_fgenesh2_pg.C_10793 Laccaria bicolor estExt_fgenesh2_pg.C_10793 N 0.722
estExt_fgenesh3_pg.C_770054 Postia placenta estExt_fgenesh3_pg.C_770054 N 0.722
ZFP36 Macropus eugenii ENSMEUG00000010317 I 0.722
estExt_fgenesh1_pm.C_10824 Schizophyllum commune estExt_fgenesh1_pm.C_10824 N 0.722
EHI_008770 Entamoeba histolytica EHI_008770 N 0.722
estExt_genemark.C_30534 Pleurotus ostreatus estExt_genemark.C_30534 N 0.722
fgenesh1_pg.C_scaffold_11000103 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_11000103 N 0.722
gw1.8.374.1 Chlorella NC64A gw1.8.374.1 N 0.717
gw1.14.301.1 Coccomyxa C 169 gw1.14.301.1 N 0.717
ENSORLG00000008378 Oryzias latipes ENSORLG00000008378 I 0.704
ZFP36 Tetraodon nigroviridis ENSTNIG00000000183 I 0.704
e_gw1.1.2331.1 Agaricus bisporus e_gw1.1.2331.1 N 0.704
fgenesh2_pg.scaffold_13000206 Monosiga brevicollis fgenesh2_pg.scaffold_13000206 N 0.704
EFA80829.1 Polysphondylium pallidum EFA80829.1 I 0.704
PTTG_07763 Puccinia triticina PTTG_07763 N 0.704
SPPG_04528 Spizellomyces punctatus SPPG_04528 N 0.704
ENSGACG00000008351 Gasterosteus aculeatus ENSGACG00000008351 I 0.704