gw1.14.301.1 (Coccomyxa C 169)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 gw1.14.301.1 T06232_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
gw1.14.301.1 CCCH ZF 1 26
gw1.14.301.1 CCCH ZF 38 62

Links

Other CCCH ZF family RBPs
Other Coccomyxa C 169 RBPs

28 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
fgeneshCV_pg.C_scaffold_14000116 Chlorella vulgaris fgeneshCV_pg.C_scaffold_14000116 I 0.926
0300010273 Ostreococcus tauri 0300010273 I 0.808
gwEuk.3.753.1 Ostreococcus lucimarinus gwEuk.3.753.1 I 0.808
gw1.3.668.1 Ostreococcus RCC809 gw1.3.668.1 I 0.788
gw1.8.374.1 Chlorella NC64A gw1.8.374.1 N 0.774
estExt_fgenesh2_kg.C_10578 Serpula lacrymans estExt_fgenesh2_kg.C_10578 N 0.759
gw1.4.464.1 Volvox carteri gw1.4.464.1 N 0.759
gw1.1.1133.1 Micromonas pusilla gw1.1.1133.1 N 0.750
CC1G_04402 Coprinopsis cinerea CC1G_04402 N 0.741
estExt_genemark.C_30534 Pleurotus ostreatus estExt_genemark.C_30534 N 0.722
e_gw1.45.79.1 Selaginella moellendorfii e_gw1.45.79.1 N 0.722
CMA121C Cyanidioschyzon merolae CMA121C N 0.722
fgenesh2_pg.C_scaffold_32000041 Selaginella moellendorfii fgenesh2_pg.C_scaffold_32000041 N 0.722
ENSGACG00000008351 Gasterosteus aculeatus ENSGACG00000008351 I 0.722
fgenesh1_pg.C_scaffold_11000103 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_11000103 N 0.722
au.g10607_t1 Chlamydomonas reinhardtii au.g10607_t1 N 0.717
EFA80829.1 Polysphondylium pallidum EFA80829.1 I 0.704
estExt_fgenesh1_pm.C_10824 Schizophyllum commune estExt_fgenesh1_pm.C_10824 N 0.704
ZFP36 Tetraodon nigroviridis ENSTNIG00000000183 I 0.704
ENSORLG00000008378 Oryzias latipes ENSORLG00000008378 I 0.704
ENSORLG00000000589 Oryzias latipes ENSORLG00000000589 I 0.704
ZFP36 Macropus eugenii ENSMEUG00000010317 I 0.704
ZFP36L2 Takifugu rubripes ENSTRUG00000006923 I 0.704
EDI_287240 Entamoeba dispar EDI_287240 N 0.704
estExt_fgenesh2_pg.C_10793 Laccaria bicolor estExt_fgenesh2_pg.C_10793 N 0.704
EIN_295900 Entamoeba invadens EIN_295900 N 0.704
EHI_008770 Entamoeba histolytica EHI_008770 N 0.704
estExt_fgenesh3_pg.C_770054 Postia placenta estExt_fgenesh3_pg.C_770054 N 0.704