CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CJA10427
(
Caenorhabditis japonica
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
CJA10427
T09683_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CJA10427
CCHC ZF
575
592
LKCFRCEGIGHTSRQCTS
Links
Other
CCHC ZF
family RBPs
Other
Caenorhabditis japonica
RBPs
20 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CJA02670
Caenorhabditis japonica
CJA02670
N
0.889
CJA04336
Caenorhabditis japonica
CJA04336
N
0.889
CJA26146
Caenorhabditis japonica
CJA26146
N
0.833
CJA10177
Caenorhabditis japonica
CJA10177
N
0.833
CJA23650
Caenorhabditis japonica
CJA23650
N
0.833
CJA27243
Caenorhabditis japonica
CJA27243
N
0.833
CJA15447
Caenorhabditis japonica
CJA15447
N
0.833
CRE09308
Caenorhabditis remanei
CRE09308
N
0.778
CJA13217
Caenorhabditis japonica
CJA13217
N
0.778
CJA11030
Caenorhabditis japonica
CJA11030
N
0.778
CRE13684
Caenorhabditis remanei
CRE13684
N
0.778
CJA05078
Caenorhabditis japonica
CJA05078
N
0.778
CJA13138
Caenorhabditis japonica
CJA13138
N
0.722
CJA00525
Caenorhabditis japonica
CJA00525
N
0.722
CJA29053
Caenorhabditis japonica
CJA29053
N
0.722
CJA18092
Caenorhabditis japonica
CJA18092
N
0.722
CJA15515
Caenorhabditis japonica
CJA15515
N
0.722
CJA28002
Caenorhabditis japonica
CJA28002
N
0.722
CJA28132
Caenorhabditis japonica
CJA28132
N
0.722
CJA21290
Caenorhabditis japonica
CJA21290
N
0.722