cassava13805.valid.m1 (Manihot esculenta)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 cassava13805.valid.m1 T13359_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava13805.valid.m1 CCHC ZF 38 54
cassava13805.valid.m1 CCHC ZF 56 73
cassava13805.valid.m1 CCHC ZF 77 92
cassava13805.valid.m1 CCHC ZF 94 111
cassava13805.valid.m1 CCHC ZF 120 137
cassava13805.valid.m1 CCHC ZF 139 156
cassava13805.valid.m1 CCHC ZF 158 175
cassava13805.valid.m1 CCHC ZF 189 204
cassava13805.valid.m1 CCHC ZF 208 225

Links

Other CCHC ZF family RBPs
Other Manihot esculenta RBPs

15 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GSVIVG00016581001 Vitis vinifera GSVIVG00016581001 N 0.892
MDP0000273719 Malus x domestica MDP0000273719 N 0.835
30170.m014131 Ricinus communis 30170.m014131 N 0.756
cassava25039.valid.m1 Manihot esculenta cassava25039.valid.m1 N 0.750
GSVIVG00024180001 Vitis vinifera GSVIVG00024180001 N 0.741
GSVIVG00009823001 Vitis vinifera GSVIVG00009823001 N 0.733
cassava3214.m1 Manihot esculenta cassava3214.m1 N 0.720
Glyma04g01070.1 Glycine max Glyma04g01070.1 N 0.720
chr1.CM0231.600.nd Lotus japonicus chr1.CM0231.600.nd N 0.720
Glyma06g01090.1 Glycine max Glyma06g01090.1 N 0.720
Medtr3g162980 Medicago truncatula Medtr3g162980 N 0.714
LOC_Os10g39820 Oryza sativa LOC_Os10g39820 N 0.710
BGIOSIBCE032955 Oryza indica BGIOSIBCE032955 N 0.710
Medtr3g162990 Medicago truncatula Medtr3g162990 N 0.708
30131.m007124 Ricinus communis 30131.m007124 N 0.702