CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CSDC2
(
Microcebus murinus
)
CSD
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00313 (CSD)
IPR002059
ENSMICG00000005978
T16896_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMICP00000005450
CSD
68
136
VFKGVCKQFSRSQGHGFITPRENGSEDIFVHVSDIEGEYVPVEGDEVTYKMCPIPPKNQKFQAVEVVLT
Links
Other
CSD
family RBPs
Other
Microcebus murinus
RBPs
80 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOC100070658
Equus caballus
ENSECAG00000022234
N
0.986
CSDC2
Procavia capensis
ENSPCAG00000014857
N
0.986
CSDC2
Erinaceus europaeus
ENSEEUG00000003639
N
0.986
CSDC2
Tursiops truncatus
ENSTTRG00000006736
N
0.986
CSDC2
Tupaia belangeri
ENSTBEG00000011596
N
0.986
Csdc2
Dipodomys ordii
ENSDORG00000011754
N
0.986
ENSPPYG00000011873
Pongo pygmaeus
ENSPPYG00000011873
N
0.986
CSDC2
Sus scrofa
ENSSSCG00000000062
N
0.986
Ame_R018068
Ailuropoda melanoleuca
Ame_R018068
N
0.986
Csdc2
Rattus norvegicus
ENSRNOG00000005332
N
0.986
CSDC2
Pteropus vampyrus
ENSPVAG00000001165
N
0.986
CSDC2
Cavia porcellus
ENSCPOG00000025372
N
0.986
CSDC2
Echinops telfairi
ENSETEG00000019516
N
0.986
CSDC2
Ochotona princeps
ENSOPRG00000010664
N
0.986
CSDC2
Felis catus
ENSFCAG00000003677
N
0.986
CSDC2
Macaca mulatta
ENSMMUG00000001852
N
0.986
CSDC2
Homo sapiens
ENSG00000172346
N
0.986
CSDC2
Loxodonta africana
ENSLAFG00000027155
N
0.986
Csdc2
Mus musculus
ENSMUSG00000042109
N
0.971
CSDC2
Otolemur garnettii
ENSOGAG00000002852
N
0.971
CSDC2
Myotis lucifugus
ENSMLUG00000002495
N
0.971
CSDC2
Macropus eugenii
ENSMEUG00000002050
N
0.971
LOC100400889
Callithrix jacchus
ENSCJAG00000002580
N
0.971
CSDC2
Oryctolagus cuniculus
ENSOCUG00000006938
N
0.971
CSDC2
Monodelphis domestica
ENSMODG00000016565
N
0.971
Q08E16_BOVIN
Bos taurus
ENSBTAG00000004004
N
0.957
CSDC2
Anolis carolinensis
ENSACAG00000004668
N
0.942
CSDC2
Taeniopygia guttata
ENSTGUG00000009898
N
0.942
CSDC2
Gallus gallus
ENSGALG00000000049
N
0.928
CSDC2
Meleagris gallopavo
ENSMGAG00000012131
N
0.928
CSDC2
Canis familiaris
ENSCAFG00000001051
N
0.886
CSDC2
Oryzias latipes
ENSORLG00000002636
N
0.841
CSDC2
Gasterosteus aculeatus
ENSGACG00000004665
N
0.841
CSDC2
Tetraodon nigroviridis
ENSTNIG00000012937
N
0.841
CSDC2
Takifugu rubripes
ENSTRUG00000017020
N
0.812
CSDC2
Tetraodon nigroviridis
ENSTNIG00000004955
N
0.812
csdc2
Danio rerio
ENSDARG00000041323
N
0.797
CSDC2
Oryzias latipes
ENSORLG00000014166
N
0.783
CSDC2
Takifugu rubripes
ENSTRUG00000004175
N
0.783
LOC100051399
Equus caballus
ENSECAG00000019386
N
0.768
LOC100395892
Callithrix jacchus
ENSCJAG00000022227
N
0.768
CARHSP1
Pan troglodytes
ENSPTRG00000007749
N
0.768
CARHSP1
Cavia porcellus
ENSCPOG00000025492
N
0.768
CARHSP1
Homo sapiens
ENSG00000153048
N
0.768
CARHSP1
Macaca mulatta
ENSMMUG00000021565
N
0.768
Carhsp1
Mus musculus
ENSMUSG00000008393
N
0.768
CARHSP1
Ornithorhynchus anatinus
ENSOANG00000008257
N
0.768
LOC100410498
Callithrix jacchus
ENSCJAG00000017286
N
0.768
CARHSP1
Ochotona princeps
ENSOPRG00000010356
N
0.768
CSDC2
Danio rerio
ENSDARG00000068477
N
0.768
CARHSP1
Tursiops truncatus
ENSTTRG00000014828
N
0.768
CARHSP1
Taeniopygia guttata
ENSTGUG00000004665
N
0.768
CARHSP1
Spermophilus tridecemlineatus
ENSSTOG00000007008
N
0.768
Ame_R007806
Ailuropoda melanoleuca
Ame_R007806
N
0.768
CARHSP1
Canis familiaris
ENSCAFG00000019003
N
0.768
Carhsp1
Rattus norvegicus
ENSRNOG00000002610
N
0.768
Q2NKU4_BOVIN
Bos taurus
ENSBTAG00000001441
N
0.754
CARHSP1
Microcebus murinus
ENSMICG00000006185
N
0.754
CARHSP1
Macropus eugenii
ENSMEUG00000016403
N
0.754
CSDC2
Gasterosteus aculeatus
ENSGACG00000007540
N
0.754
CARHSP1
Tupaia belangeri
ENSTBEG00000005777
N
0.754
CARHSP1
Otolemur garnettii
ENSOGAG00000014708
N
0.754
CARHSP1
Dasypus novemcinctus
ENSDNOG00000024912
N
0.754
CARHSP1
Procavia capensis
ENSPCAG00000002081
N
0.754
CARHSP1
Sus scrofa
ENSSSCG00000007911
N
0.754
carhsp1
Danio rerio
ENSDARG00000053129
N
0.739
CARHSP1
Myotis lucifugus
ENSMLUG00000009734
N
0.739
CARHSP1
Gallus gallus
ENSGALG00000007313
N
0.739
XM_001367025.1
Monodelphis domestica
ENSMODG00000005721
N
0.739
ENSMGAG00000008554
Meleagris gallopavo
ENSMGAG00000008554
N
0.739
CARHSP1
Gasterosteus aculeatus
ENSGACG00000005857
N
0.739
CARHSP1
Echinops telfairi
ENSETEG00000008180
N
0.739
CARHSP1
Pteropus vampyrus
ENSPVAG00000003125
N
0.739
AAH84399
Xenopus laevis
AAH84399
N
0.739
ENSPPYG00000007085
Pongo pygmaeus
ENSPPYG00000007085
N
0.725
CARHSP1
Felis catus
ENSFCAG00000003289
N
0.725
CARHSP1
Takifugu rubripes
ENSTRUG00000010962
N
0.725
CARHSP1
Loxodonta africana
ENSLAFG00000022498
N
0.725
CARHSP1
Tetraodon nigroviridis
ENSTNIG00000011153
N
0.725
XM_001363201.1
Monodelphis domestica
ENSMODG00000024949
N
0.710