CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GJ12391
(
Drosophila virilis
)
CSD
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00313 (CSD)
IPR002059
FBgn0199634
T17100_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0226808
CSD
188
253
RETGIIEKLLHSYGFIQCCERQARLFFHFSQFSGNIDHLKIGDPVEFEMTYDRRTGKPIASQVSKI
FBpp0226808
CSD
275
339
DSANNVLSSSETTGRISYENRGECFFLPYTKDDVEGNVNLRAGDKVSFQIATNQRGNLGACHIRL
FBpp0226808
CSD
347
415
KYRGVVCSMKESFGFIERADVVKEIFFHFSEAEGNVELRPGDDVEFTIQTRSSASVPPQGREFACNITR
FBpp0226808
CSD
519
586
REQGTIASLKEGFGFLRCVERQVRLFFHFTEVLDTSREIDVNDEVEFTVIQEPGLAYNNSRLQAIRIK
FBpp0226808
CSD
788
848
LYRGFIAVIKENFGFIETLSHDEEVFFHFSNYQGNPNWLELGQEVEYTLAPNGNTSVSGNC
FBpp0226808
CSD
939
989
AEVEDGKKLFFHMSEVQGNTVALHPGDTSSSPWLPIRWRNGKSSACNVLKI
Links
Other
CSD
family RBPs
Other
Drosophila virilis
RBPs
10 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GH16406
Drosophila grimshawi
FBgn0123877
N
0.915
GI12487
Drosophila mojavensis
FBgn0135244
N
0.915
GA23356-RA
Drosophila pseudoobscura
FBgn0244758
N
0.915
GM24938
Drosophila sechellia
FBgn0179800
N
0.907
GG15082
Drosophila erecta
FBgn0107336
N
0.907
Unr
Drosophila melanogaster
FBgn0035895
N
0.907
GF10107
Drosophila ananassae
FBgn0087148
N
0.905
GE21305
Drosophila yakuba
FBgn0238572
N
0.905
GK17751
Drosophila willistoni
FBgn0219750
N
0.900
AGAP004937
Anopheles gambiae
AGAP004937
N
0.709