CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GA23356-RA
(
Drosophila pseudoobscura
)
CSD
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00313 (CSD)
IPR002059
FBgn0244758
T17109_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0273985
CSD
176
241
RETGIIEKLLHSYGFIQCCERQARLFFHFSQFSGNIDHLKIGDPVEFEMTYDRRTGKPIASQVSKI
FBpp0273985
CSD
263
327
DSANNVLSSSETTGRISYENRGECFFLPYTKDDVEGNVNLRAGDKVSFQIATNQRGNLGACHIRL
FBpp0273985
CSD
335
403
KYRGVVCSMKESFGFIERADVVKEIFFHFSEAEGNVELRPGDDVEFTIQTRSSATVPPQGREFACNITR
FBpp0273985
CSD
507
574
REQGTIASLKEGFGFLRCVERQVRLFFHFTEVLDTSREIDVNDEVEFTVIQEPGLAYNNSRLQAIRIK
FBpp0273985
CSD
760
819
LYRGFIAVMKENFGFIETLSHDEEVFFHFSNYQGNPNWLELGQEVEYTLAPNGNTSVSGN
FBpp0273985
CSD
919
985
KKRATVDSIKGQFGFLNFEVEDGKKLFFHMSEVQGNTVALHPGDTVEFSVVTNQRNGKSSACNVVKI
Links
Other
CSD
family RBPs
Other
Drosophila pseudoobscura
RBPs
11 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GI12487
Drosophila mojavensis
FBgn0135244
N
0.985
GH16406
Drosophila grimshawi
FBgn0123877
N
0.982
GF10107
Drosophila ananassae
FBgn0087148
N
0.980
GK17751
Drosophila willistoni
FBgn0219750
N
0.972
Unr
Drosophila melanogaster
FBgn0035895
N
0.970
GG15082
Drosophila erecta
FBgn0107336
N
0.970
GM24938
Drosophila sechellia
FBgn0179800
N
0.970
GE21305
Drosophila yakuba
FBgn0238572
N
0.967
GJ12391
Drosophila virilis
FBgn0199634
N
0.915
AGAP004937
Anopheles gambiae
AGAP004937
N
0.757
AAEL010018
Aedes aegypti
AAEL010018
N
0.739