CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GM24938
(
Drosophila sechellia
)
CSD
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00313 (CSD)
IPR002059
FBgn0179800
T17095_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0206415
CSD
183
248
RETGIIEKLLHSYGFIQCCERQARLFFHFSQFSGNIDHLKIGDPVEFEMTYDRRTGKPIASQVSKI
FBpp0206415
CSD
271
334
SANNVLNSSETTGRISYENRGECFFLPYTKDDVEGNVNLRAGDKVSFQIATNQRGNLGACHIRL
FBpp0206415
CSD
342
410
KYRGVVCSMKESFGFIERADVVKEIFFHFSEAEGNVELRPGDDVEFTIQTRSSASVPPQGREFACNITR
FBpp0206415
CSD
514
581
REQGTIASLKEGFGFLRCVERQARLFFHFTEVLDTSREIDINDEVEFTVIQEPGLAYNNSRLQAIRIK
FBpp0206415
CSD
760
821
VYRGFIAVMKENFGFIETLSHDEEVFFHFSNYMGNPNWLELGQEVEYTLARNGNTSVSGNCL
FBpp0206415
CSD
919
985
KKRATVDSIKGQFGFLNFEVEDGKKLFFHMSEVQGNTVALHPGDTVEFSVVTNQRNGKSSACNVLKI
Links
Other
CSD
family RBPs
Other
Drosophila sechellia
RBPs
11 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GG15082
Drosophila erecta
FBgn0107336
N
1.000
Unr
Drosophila melanogaster
FBgn0035895
N
1.000
GE21305
Drosophila yakuba
FBgn0238572
N
0.997
GF10107
Drosophila ananassae
FBgn0087148
N
0.972
GA23356-RA
Drosophila pseudoobscura
FBgn0244758
N
0.970
GH16406
Drosophila grimshawi
FBgn0123877
N
0.965
GI12487
Drosophila mojavensis
FBgn0135244
N
0.965
GK17751
Drosophila willistoni
FBgn0219750
N
0.962
GJ12391
Drosophila virilis
FBgn0199634
N
0.907
AGAP004937
Anopheles gambiae
AGAP004937
N
0.751
AAEL010018
Aedes aegypti
AAEL010018
N
0.738