CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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AGAP004937
(
Anopheles gambiae
)
CSD
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00313 (CSD)
IPR002059
AGAP004937
T16702_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
AGAP004937-PA
CSD
111
176
RETGIIEKLLHSYGFIQCCERQARLFFHFSQFGGNIEHLKIGDPVEFEMTYDRRTGKPIASQVTKI
AGAP004937-PA
CSD
211
268
SSDTTTGRISYENRGECFFLPYTKDDVEGNVSLRSGDKVSFQIATNQRGNLGACHIRL
AGAP004937-PA
CSD
276
340
KYRGVVCSMKDTFGFIERADVVKEIFFHFSEADNTIELRPGDDVEFIIQTRNVSGKEVACNIARL
AGAP004937-PA
CSD
444
510
REQGVVASLKEGFGFLRCVERSVRLFFHFTEVLDTSREICVDDEVEFTVIQDPGSSFANNRQSAIRI
AGAP004937-PA
CSD
677
742
HHGFIAVLKENFGFIETVEHDQEVFFHFSNFVGNSNTLELGHEVEYTLSTRNAINAGNCIPAENVK
AGAP004937-PA
CSD
833
900
KKQAKVDSIKGQFGFLDFEVDEGKKLFFHMSDVQGNVNLYLGDTVEFSIVTNQASRNGKTSACNVVKI
Links
Other
CSD
family RBPs
Other
Anopheles gambiae
RBPs
13 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAEL010018
Aedes aegypti
AAEL010018
N
0.910
CpipJ_CPIJ005674
Culex pipiens
CpipJ_CPIJ005674
N
0.821
CPIJ005674
Culex quinquefasciatus
CPIJ005674
N
0.821
GA23356-RA
Drosophila pseudoobscura
FBgn0244758
N
0.757
GI12487
Drosophila mojavensis
FBgn0135244
N
0.752
GF10107
Drosophila ananassae
FBgn0087148
N
0.752
GM24938
Drosophila sechellia
FBgn0179800
N
0.751
GG15082
Drosophila erecta
FBgn0107336
N
0.751
Unr
Drosophila melanogaster
FBgn0035895
N
0.751
GH16406
Drosophila grimshawi
FBgn0123877
N
0.749
GE21305
Drosophila yakuba
FBgn0238572
N
0.749
GK17751
Drosophila willistoni
FBgn0219750
N
0.747
GJ12391
Drosophila virilis
FBgn0199634
N
0.709