CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GH16406
(
Drosophila grimshawi
)
CSD
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00313 (CSD)
IPR002059
FBgn0123877
T17086_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0150312
CSD
194
259
RETGIIEKLLHSYGFIQCCERQARLFFHFSQFSGNIDHLKIGDPVEFEMTYDRRTGKPIASQVSKI
FBpp0150312
CSD
280
345
TDSANNVLTSSETTGRISYENRGECFFLPYTKDDVEGNVNLRAGDKVSFQIATNQRGNLGACHIRL
FBpp0150312
CSD
353
421
KYRGVVCSMKESFGFIERADVVKEIFFHFSEAEGNVELRPGDDVEFTIQTRSSASVPPQGREFACNITR
FBpp0150312
CSD
525
592
REQGTIASLKEGFGFLRCVERQVRLFFHFTEVLDTSREIDVNDEVEFTVIQEPGLAYNNSRLQAIRIK
FBpp0150312
CSD
786
844
LYRGFIAVIKENFGFIETLSHDEEVFFHFSNYQGNPNWLELGQEVEYTLAPNGNTSVSG
FBpp0150312
CSD
945
1011
KKRATVDSIKGQFGFLNFEVEDGKKLFFHMSEVQGSTVALHPGDTVEFSVVTNQRNGKSSACNVLKI
Links
Other
CSD
family RBPs
Other
Drosophila grimshawi
RBPs
11 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GA23356-RA
Drosophila pseudoobscura
FBgn0244758
N
0.982
GF10107
Drosophila ananassae
FBgn0087148
N
0.977
GI12487
Drosophila mojavensis
FBgn0135244
N
0.977
GE21305
Drosophila yakuba
FBgn0238572
N
0.967
GG15082
Drosophila erecta
FBgn0107336
N
0.965
GM24938
Drosophila sechellia
FBgn0179800
N
0.965
Unr
Drosophila melanogaster
FBgn0035895
N
0.965
GK17751
Drosophila willistoni
FBgn0219750
N
0.965
GJ12391
Drosophila virilis
FBgn0199634
N
0.915
AGAP004937
Anopheles gambiae
AGAP004937
N
0.749
AAEL010018
Aedes aegypti
AAEL010018
N
0.736