CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
amel4_ncbi_hmm4445
(
Apis mellifera
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
amel4_ncbi_hmm4445
T17991_0.6
DroSpeGe (2008-Jul-18)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
amel4_ncbi_hmm4445
KH
139
196
FVKRRQRLIGPKGCTLKSIELLTNCYVLVQGQTVAALGPYRSLPLVRRIVEDTMKNIH
Links
Other
KH
family RBPs
Other
Apis mellifera
RBPs
7 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
nasonia_NCBI_hmm386444
Nasonia vitripennis
nasonia_NCBI_hmm386444
N
0.862
DGIL_AUG5s1009g5t1
Acyrtosiphon pisum
DGIL_AUG5s1009g5t1
N
0.828
GF14827
Drosophila ananassae
FBgn0091854
N
0.776
KRR1
Oryzias latipes
ENSORLG00000019616
N
0.759
PASA_GEN_0400107
Daphnia pulex
PASA_GEN_0400107
N
0.759
PHUM590060
Pediculus humanus
PHUM590060
N
0.741
estExt_Genewise1Plus.C_20041
Sporobolomyces roseus
estExt_Genewise1Plus.C_20041
N
0.707