CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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BGIOSIBCE004076
(
Oryza indica
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
BGIOSIBCE004076
T18121_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
BGIOSIBCE004076
KH
138
222
IVRLEVPTDAYPHFNFIGRLLGPRGNSLKRVEASTGCRVFIRGKGSIKDPIKASLFVTFKEEQLKGRPGYEHLSDPTHILIEAEL
Links
Other
KH
family RBPs
Other
Oryza indica
RBPs
14 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOC_Os01g60260
Oryza sativa
LOC_Os01g60260
N
0.865
BGIOSIBCE024206
Oryza indica
BGIOSIBCE024206
N
0.776
LOC_Os07g12490
Oryza sativa
LOC_Os07g12490
N
0.765
AC218972.3_FG007
Zea mays
AC218972.3_FG007
N
0.763
SB03G038070
Sorghum bicolor
Sb03g038070
N
0.763
GRMZM2G093006
Zea mays
GRMZM2G093006
N
0.763
GRMZM2G085582
Zea mays
GRMZM2G085582
N
0.742
BGIOSIBCE019437
Oryza indica
BGIOSIBCE019437
N
0.742
LOC_Os05g40290
Oryza sativa
LOC_Os05g40290
N
0.742
BRADI2G22090
Brachypodium distachyon
BRADI2G22090
N
0.731
GRMZM2G122569
Zea mays
GRMZM2G122569
N
0.717
SB09G023640
Sorghum bicolor
Sb09g023640
N
0.717
GRMZM2G472052
Zea mays
GRMZM2G472052
N
0.708
BRADI1G53760
Brachypodium distachyon
BRADI1G53760
N
0.708