CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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KHDRBS3
(
Pteropus vampyrus
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSPVAG00000017021
T19420_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
KHDRBS3
M033_0.6
Homo sapiens
AUAAAV
RNAcompete
Ray et al.(2013)
RNCMPT00034
0.976
KHDRBS2
M176_0.6
Homo sapiens
RAUAAAM
RNAcompete
Ray et al.(2013)
RNCMPT00185
0.835
Khdrbs1
M060_0.6
Mus musculus
UAAAAVV
RNAcompete
Ray et al.(2013)
RNCMPT00062
0.753
KHDRBS1
M160_0.6
Homo sapiens
AUAAAAV
RNAcompete
Ray et al.(2013)
RNCMPT00169
0.753
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPVAP00000016055
KH
28
110
QKVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYFLNDDLHVLIEVFAPPAEAY
Links
Other
KH
family RBPs
Other
Pteropus vampyrus
RBPs
98 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Q6J4Q6_MACMU
Macaca mulatta
ENSMMUG00000022248
I
0.988
Q6J4Q8_9PRIM
Gorilla gorilla
ENSGGOG00000000940
I
0.976
KHDRBS3
Loxodonta africana
ENSLAFG00000004849
I
0.976
Ame_R010681
Ailuropoda melanoleuca
Ame_R010681
I
0.976
KHDRBS3
Canis familiaris
ENSCAFG00000001166
I
0.976
KHDRBS3
Homo sapiens
ENSG00000131773
D
0.976
LOC100399263
Callithrix jacchus
ENSCJAG00000004331
I
0.976
KHDRBS3
Cavia porcellus
ENSCPOG00000000342
I
0.976
KHDRBS3
Echinops telfairi
ENSETEG00000004701
I
0.976
KHDRBS3
Monodelphis domestica
ENSMODG00000000975
I
0.976
KHDRBS3
Otolemur garnettii
ENSOGAG00000005150
I
0.976
KHDRBS3
Anolis carolinensis
ENSACAG00000012042
I
0.976
Q6J4Q9_PANTR
Pan troglodytes
ENSPTRG00000020608
I
0.976
A4FV24_BOVIN
Bos taurus
ENSBTAG00000002181
I
0.976
KHDRBS3
Sus scrofa
ENSSSCG00000005941
I
0.976
KHDRBS3
Tupaia belangeri
ENSTBEG00000004773
I
0.976
Khdrbs3
Mus musculus
ENSMUSG00000022332
I
0.976
KHDRBS3
Ornithorhynchus anatinus
ENSOANG00000014074
I
0.976
KHDRBS3
Tursiops truncatus
ENSTTRG00000001270
I
0.976
KHDRBS3
Meleagris gallopavo
ENSMGAG00000012888
I
0.964
KHDRBS3
Ochotona princeps
ENSOPRG00000000404
I
0.964
KHDRBS3
Oryctolagus cuniculus
ENSOCUG00000000743
I
0.964
KHDRBS3
Gallus gallus
ENSGALG00000016203
I
0.964
LOC100058116
Equus caballus
ENSECAG00000010194
I
0.964
KHDRBS3
Spermophilus tridecemlineatus
ENSSTOG00000008710
I
0.964
KHDRBS3
Taeniopygia guttata
ENSTGUG00000012611
I
0.964
KHDRBS3
Takifugu rubripes
ENSTRUG00000013451
I
0.929
khdrbs3
Xenopus tropicalis
ENSXETG00000009227
I
0.929
KHDRBS3
Oryzias latipes
ENSORLG00000013441
I
0.917
KHDRBS3
Tetraodon nigroviridis
ENSTNIG00000014021
I
0.917
KHDRBS3
Gasterosteus aculeatus
ENSGACG00000008847
I
0.905
KHDRBS2
Erinaceus europaeus
ENSEEUG00000003986
I
0.835
LOC100056966
Equus caballus
ENSECAG00000021541
I
0.835
KHDRBS2
Loxodonta africana
ENSLAFG00000006655
I
0.835
KHDRBS2
Gorilla gorilla
ENSGGOG00000025068
I
0.835
KHDRBS2
Gallus gallus
ENSGALG00000016276
I
0.835
KHDRBS2
Anolis carolinensis
ENSACAG00000006691
I
0.835
KHDRBS2
Oryctolagus cuniculus
ENSOCUG00000012344
I
0.835
KHDRBS2
Sus scrofa
ENSSSCG00000001490
I
0.835
KHDRBS2
Homo sapiens
ENSG00000112232
D
0.835
KHDRBS2
Taeniopygia guttata
ENSTGUG00000012786
I
0.835
KHDRBS2
Cavia porcellus
ENSCPOG00000025621
I
0.835
KHDRBS2
Pan troglodytes
ENSPTRG00000018311
I
0.835
KHDRBS2
Meleagris gallopavo
ENSMGAG00000013877
I
0.835
KHDRBS2
Canis familiaris
ENSCAFG00000002470
I
0.835
KHDRBS2
Tursiops truncatus
ENSTTRG00000005591
I
0.835
Khdrbs2
Rattus norvegicus
ENSRNOG00000012284
I
0.835
KHDRBS2
Bos taurus
ENSBTAG00000043990
I
0.835
LOC100395662
Callithrix jacchus
ENSCJAG00000001766
I
0.835
KHDRBS2
Macaca mulatta
ENSMMUG00000003329
I
0.835
KHDRBS2
Tarsius syrichta
ENSTSYG00000007203
I
0.835
Khdrbs3
Rattus norvegicus
ENSRNOG00000009539
I
0.833
KHDRBS3
Sorex araneus
ENSSARG00000011751
I
0.833
Khdrbs2
Mus musculus
ENSMUSG00000026058
I
0.824
KHDRBS2
Vicugna pacos
ENSVPAG00000001469
I
0.824
Khdrbs2
Dipodomys ordii
ENSDORG00000005701
I
0.824
KHDRBS2
Dasypus novemcinctus
ENSDNOG00000014028
I
0.824
KHDRBS2
Monodelphis domestica
ENSMODG00000018714
I
0.824
KHDRBS2
Takifugu rubripes
ENSTRUG00000015760
I
0.800
khdrbs2
Danio rerio
ENSDARG00000069469
I
0.800
KHDRBS3
Tarsius syrichta
ENSTSYG00000004106
I
0.798
KHDRBS2
Gasterosteus aculeatus
ENSGACG00000006097
I
0.788
KHDRBS2
Oryzias latipes
ENSORLG00000010165
I
0.776
KHDRBS2
Procavia capensis
ENSPCAG00000001426
I
0.762
KHDRBS1
Spermophilus tridecemlineatus
ENSSTOG00000014138
I
0.753
KHDRBS1
Pteropus vampyrus
ENSPVAG00000013289
I
0.753
XM_001365874.1
Monodelphis domestica
ENSMODG00000017551
I
0.753
ENSPPYG00000001605
Pongo pygmaeus
ENSPPYG00000001605
I
0.753
KHDRBS1
Pan troglodytes
ENSPTRG00000000469
I
0.753
Khdrbs1
Mus musculus
ENSMUSG00000028790
D
0.753
KHDRBS1
Ochotona princeps
ENSOPRG00000005131
I
0.753
KHDRBS1
Tupaia belangeri
ENSTBEG00000016857
I
0.753
KHDRBS1
Ornithorhynchus anatinus
ENSOANG00000012357
I
0.753
KHDRBS1
Oryctolagus cuniculus
ENSOCUG00000007654
I
0.753
KHDRBS1
Procavia capensis
ENSPCAG00000009844
I
0.753
KHDRBS1
Gorilla gorilla
ENSGGOG00000008633
I
0.753
KHDRBS1
Tarsius syrichta
ENSTSYG00000004921
I
0.753
KHDRBS1
Cavia porcellus
ENSCPOG00000024148
I
0.753
KHDRBS1
Equus caballus
ENSECAG00000019346
I
0.753
KHDRBS1
Felis catus
ENSFCAG00000006511
I
0.753
LOC100414412
Callithrix jacchus
ENSCJAG00000006580
I
0.753
ENSCHOG00000006973
Choloepus hoffmanni
ENSCHOG00000006973
I
0.753
KHDRBS1
Tursiops truncatus
ENSTTRG00000009637
I
0.753
Q29RQ2_BOVIN
Bos taurus
ENSBTAG00000012497
I
0.753
KHDRBS1
Canis familiaris
ENSCAFG00000010777
I
0.753
KHDRBS1
Macaca mulatta
ENSMMUG00000023438
I
0.753
KHDRBS1
Homo sapiens
ENSG00000121774
D
0.753
KHDRBS1
Vicugna pacos
ENSVPAG00000006966
I
0.753
KHDRBS1
Meleagris gallopavo
ENSMGAG00000004455
I
0.753
Ame_R010128
Ailuropoda melanoleuca
Ame_R010128
I
0.753
KHDR1_CHICK
Gallus gallus
ENSGALG00000003272
I
0.753
KHDRBS1
Loxodonta africana
ENSLAFG00000009414
I
0.753
KHDRBS1
Anolis carolinensis
ENSACAG00000011693
I
0.741
KHDRBS2
Myotis lucifugus
ENSMLUG00000005484
I
0.738
Ame_R015982
Ailuropoda melanoleuca
Ame_R015982
I
0.738
KHDRBS1
Taeniopygia guttata
ENSTGUG00000017346
I
0.729
khdrbs1
Xenopus tropicalis
ENSXETG00000005246
I
0.718
KHDRBS1
Sorex araneus
ENSSARG00000008479
I
0.718