estExt_gwp_gw1.C_680211 (Physcomitrella patens)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 estExt_gwp_gw1.C_680211 T21000_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_gwp_gw1.C_680211 KH 130 204

Links

Other KH family RBPs
Other Physcomitrella patens RBPs

31 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LjSGA_139736.1.1 Lotus japonicus LjSGA_139736.1.1 N 0.773
estExt_Genewise1.C_2260018 Physcomitrella patens estExt_Genewise1.C_2260018 N 0.773
SB09G020640 Sorghum bicolor Sb09g020640 N 0.753
28128.m000156 Ricinus communis 28128.m000156 N 0.750
MDP0000300654 Malus x domestica MDP0000300654 N 0.750
LOC_Os07g12490 Oryza sativa LOC_Os07g12490 N 0.750
estExt_fgenesh1_pm.C_2690009 Physcomitrella patens estExt_fgenesh1_pm.C_2690009 N 0.747
BRADI3G56540 Brachypodium distachyon BRADI3G56540 N 0.747
MDP0000077749 Malus x domestica MDP0000077749 N 0.741
BGIOSIBCE024206 Oryza indica BGIOSIBCE024206 N 0.740
chr6.LjT09E22.140.nd Lotus japonicus chr6.LjT09E22.140.nd N 0.737
LOC_Os05g34670 Oryza sativa LOC_Os05g34670 N 0.733
BGIOSIBCE019075 Oryza indica BGIOSIBCE019075 N 0.733
ppa009341m Prunus persica ppa009341m N 0.733
ppa009432m Prunus persica ppa009432m N 0.728
GRMZM2G472052 Zea mays GRMZM2G472052 N 0.728
A9PGC0_POPTR Populus trichocarpa POPTR_0011s17110 N 0.718
POPTR_0001s47500 Populus trichocarpa POPTR_0001s47500 N 0.718
BRADI1G53760 Brachypodium distachyon BRADI1G53760 N 0.716
cassava13308.valid.m1 Manihot esculenta cassava13308.valid.m1 N 0.714
cassava13309.valid.m1 Manihot esculenta cassava13309.valid.m1 N 0.714
cassava15324.m1 Manihot esculenta cassava15324.m1 N 0.714
cassava30587.valid.m1 Manihot esculenta cassava30587.valid.m1 N 0.707
LOC_Os02g49080 Oryza sativa LOC_Os02g49080 N 0.707
PK16956.1 Cannabis sativa PK16956.1 N 0.707
GSVIVG00014762001 Vitis vinifera GSVIVG00014762001 N 0.707
BGIOSIBCE008472 Oryza indica BGIOSIBCE008472 N 0.707
Glyma04g12370.1 Glycine max Glyma04g12370.1 N 0.707
PK01720.1 Cannabis sativa PK01720.1 N 0.706
Medtr5g083520 Medicago truncatula Medtr5g083520 N 0.705
BRADI1G04120 Brachypodium distachyon BRADI1G04120 N 0.704