CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
estExt_Genewise1Plus.C_140444
(
Mycosphaerella fijiensis
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
estExt_Genewise1Plus.C_140444
T20959_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_Genewise1Plus.C_140444
KH
275
350
VDTIRLELSLHNLISGRHRRNIKLIESATGTAIYFPPMFPTVFGYTPPGSVPLRSRDDIIITGENMDSILQAKKRL
estExt_Genewise1Plus.C_140444
KH
455
489
LPDICINSGAEITFEKLNFHINGSDDSVKAAMSII
estExt_Genewise1Plus.C_140444
KH
501
564
TLRVKVELANEHKEFVSGKKNGKINKIMSQSNVQIVFDGFNEYNFYIDVRGAQYEATKNGLDLV
estExt_Genewise1Plus.C_140444
KH
571
645
SISFHVPDQYHKRIIGIGGQHIQRIMKKYSVFVKFSNAMDRGGIGKDDDDIKVDNVICRTPARNADNLELVKQEI
estExt_Genewise1Plus.C_140444
KH
658
716
SEHVPVDRLYHRELIARMPEIEDLEKKWNCKITFPGTEQASDIITVSGPEYQVPQAVDE
Links
Other
KH
family RBPs
Other
Mycosphaerella fijiensis
RBPs
10 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_Genewise1Plus.C_210177
Cochliobolus heterostrophus C5
estExt_Genewise1Plus.C_210177
N
0.766
fgenesh1_pg.00866_#_126
Aspergillus carbonarius
fgenesh1_pg.00866_#_126
N
0.740
MCYG_03492
Microsporum canis
MCYG_03492
N
0.740
UREG_06534
Uncinocarpus reesii
UREG_06534
N
0.737
HCAG_05999
Histoplasma capsulatum
HCAG_05999
N
0.734
ATEG_01323
Aspergillus terreus
CADATEAG00002653
N
0.734
Pc12g11760
Penicillium chrysogenum
Pc12g11760
N
0.732
BDBG_03236
Blastomyces dermatitidis
BDBG_03236
N
0.705
FOXG_08528
Fusarium oxysporum
FOXG_08528
N
0.700
FVEG_06144
Fusarium verticillioides
FVEG_06144
N
0.700