CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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HCAG_05999
(
Histoplasma capsulatum
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
HCAG_05999
T17678_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
HCAG_05999T0
KH
275
348
DAMKLELSMHTLVCGRTRKNIKLIEASTNTAIYFPPPFPRVFGYTPPGGSRRSEDEVYITGETQEQISLAKQKL
HCAG_05999T0
KH
461
497
TMLSDICTNSGAEVSFDKLTFTINGSDDSVKAAMMVI
HCAG_05999T0
KH
511
571
RVKIELANEHKEFVSGKKNGKINKIMGQSNVQIIFDGFNEYNFYIDVCGTQYDATRNGLDL
HCAG_05999T0
KH
579
646
SISFHVPDQYHKRIIGIGGQHIQRIMKKYSVFVKFSNAMDRGGVGKEDDDVKIDNVICRTPARNAQNL
HCAG_05999T0
KH
668
725
TVVINRLYHRELLARMSEIEELEKKWNCKIDFPSTELASDFVTISGPEYQVPQAVDAF
Links
Other
KH
family RBPs
Other
Histoplasma capsulatum
RBPs
19 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BDBG_03236
Blastomyces dermatitidis
BDBG_03236
N
0.946
ATEG_01323
Aspergillus terreus
CADATEAG00002653
N
0.895
fgenesh1_pg.00866_#_126
Aspergillus carbonarius
fgenesh1_pg.00866_#_126
N
0.895
Pc12g11760
Penicillium chrysogenum
Pc12g11760
N
0.872
UREG_06534
Uncinocarpus reesii
UREG_06534
N
0.853
ACLA_074000
Aspergillus clavatus
CADACLAG00007261
N
0.841
PABG_06460
Paracoccidioides brasiliensis
PABG_06460
N
0.831
MCYG_03492
Microsporum canis
MCYG_03492
N
0.818
estExt_Genewise1Plus.C_210177
Cochliobolus heterostrophus C5
estExt_Genewise1Plus.C_210177
N
0.779
MGYG_03096
Microsporum gypseum
MGYG_03096
N
0.770
TESG_05929
Trichophyton tonsurans
TESG_05929
N
0.770
TERG_04920
Trichophyton rubrum
TERG_04920
N
0.770
TEQG_01206
Trichophyton equinum
TEQG_01206
N
0.767
estExt_Genewise1Plus.C_140444
Mycosphaerella fijiensis
estExt_Genewise1Plus.C_140444
N
0.734
e_gw1.2.59.1
Trichoderma atroviride
e_gw1.2.59.1
N
0.721
estExt_GeneWisePlus.C_20165
Trichoderma reesei
estExt_GeneWisePlus.C_20165
N
0.717
FOXG_08528
Fusarium oxysporum
FOXG_08528
N
0.714
FVEG_06144
Fusarium verticillioides
FVEG_06144
N
0.714
FGSG_06181
Fusarium graminearum
FGSG_06181
N
0.713