PCBP3 (Gasterosteus aculeatus)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSGACG00000014955 T18844_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Pcbp3
M188_0.6 		Mus musculus UUUYCC RNAcompete
Ray et al.(2013)
RNCMPT00215 		0.973
PCBP2
M043_0.6 		Homo sapiens CCYYCCH RNAcompete
Ray et al.(2013)
RNCMPT00044 		0.872
pcbp2
M211_0.6 		Danio rerio WWUCCC RNAcompete
Ray et al.(2013)
RNCMPT00246 		0.867
Pcbp1
M207_0.6 		Mus musculus CYUUCC RNAcompete
Ray et al.(2013)
RNCMPT00239 		0.851
PCBP1
M177_0.6 		Homo sapiens CCWWHCC RNAcompete
Ray et al.(2013)
RNCMPT00186 		0.851
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000019731 KH 17 77
ENSGACP00000019731 KH 101 164
ENSGACP00000019731 KH 287 349

Links

Other KH family RBPs
Other Gasterosteus aculeatus RBPs

128 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PCBP3 Tetraodon nigroviridis ENSTNIG00000010615 I 0.995
PCBP3 Takifugu rubripes ENSTRUG00000013604 I 0.995
PCBP3 Takifugu rubripes ENSTRUG00000006280 I 0.984
LOC100050101 Equus caballus ENSECAG00000012413 I 0.973
PCBP3 Tursiops truncatus ENSTTRG00000015075 I 0.973
PCBP3 Homo sapiens ENSG00000183570 I 0.973
PCBP3 Macaca mulatta ENSMMUG00000003825 I 0.973
Pcbp3 Mus musculus ENSMUSG00000001120 D 0.973
LOC100408015 Callithrix jacchus ENSCJAG00000001903 I 0.973
PCBP3 Pan troglodytes ENSPTRG00000014010 I 0.973
PCBP3 Anolis carolinensis ENSACAG00000004607 I 0.973
PCBP3 Gasterosteus aculeatus ENSGACG00000002266 I 0.973
PCBP3 Cavia porcellus ENSCPOG00000003648 I 0.973
Pcbp3 Rattus norvegicus ENSRNOG00000001245 I 0.973
PCBP3 Oryctolagus cuniculus ENSOCUG00000002696 I 0.973
PCBP3 Gorilla gorilla ENSGGOG00000003683 I 0.973
PCBP3 Meleagris gallopavo ENSMGAG00000001883 I 0.973
Q17QV0_BOVIN Bos taurus ENSBTAG00000030775 I 0.963
PCBP3 Oryzias latipes ENSORLG00000000059 I 0.958
PCBP3-2 Taeniopygia guttata ENSTGUG00000008158 I 0.936
PCBP3 Gallus gallus ENSGALG00000013155 I 0.936
PCBP3 Gallus gallus ENSGALG00000004394 I 0.936
ENSACAG00000009819 Anolis carolinensis ENSACAG00000009819 I 0.931
PCBP3 Macropus eugenii ENSMEUG00000012960 I 0.926
PCBP3 Ochotona princeps ENSOPRG00000003431 I 0.921
pcbp3 Danio rerio ENSDARG00000054378 I 0.899
ENSMGAG00000006794 Meleagris gallopavo ENSMGAG00000006794 I 0.888
PCBP3 Loxodonta africana ENSLAFG00000020835 I 0.883
Ame_R007160 Ailuropoda melanoleuca Ame_R007160 I 0.883
PCBP3 Microcebus murinus ENSMICG00000012679 I 0.878
ENSCPOG00000000967 Cavia porcellus ENSCPOG00000000967 I 0.872
PCBP2 Pan troglodytes ENSPTRG00000005018 I 0.872
PCBP2 Gorilla gorilla ENSGGOG00000012613 I 0.872
PCBP2 Pteropus vampyrus ENSPVAG00000012284 I 0.872
ENSACAG00000000783 Anolis carolinensis ENSACAG00000000783 I 0.872
PCBP2 Canis familiaris ENSCAFG00000006821 I 0.872
ENSPPYG00000004581 Pongo pygmaeus ENSPPYG00000004581 I 0.872
ENSLAFG00000013187 Loxodonta africana ENSLAFG00000013187 I 0.872
PCBP2 Procavia capensis ENSPCAG00000005154 I 0.872
PCBP3 Otolemur garnettii ENSOGAG00000008044 I 0.872
ENSMODG00000000280 Monodelphis domestica ENSMODG00000000280 I 0.872
PCBP2 Equus caballus ENSECAG00000022389 I 0.872
PCBP2 Microcebus murinus ENSMICG00000011651 I 0.872
PCBP2 Macaca mulatta ENSMMUG00000006608 I 0.872
PCBP2 Tursiops truncatus ENSTTRG00000017174 I 0.872
Q3SYT9_BOVIN Bos taurus ENSBTAG00000020757 I 0.872
Pcbp2 Mus musculus ENSMUSG00000056851 I 0.872
PCBP2 Ochotona princeps ENSOPRG00000004680 I 0.872
ENSOCUG00000022490 Oryctolagus cuniculus ENSOCUG00000022490 I 0.872
PCBP2 Sus scrofa ENSSSCG00000000274 I 0.872
PCBP2 Dasypus novemcinctus ENSDNOG00000008688 I 0.872
PCBP2 Homo sapiens ENSG00000197111 D 0.872
pcbp2 Danio rerio ENSDARG00000013184 D 0.867
CAB50743 Xenopus laevis CAB50743 I 0.867
AAH84195 Xenopus laevis AAH84195 I 0.867
pcbp3 Xenopus tropicalis ENSXETG00000012658 I 0.867
CAD29864 Xenopus laevis CAD29864 I 0.867
AAH41241 Xenopus laevis AAH41241 I 0.867
ENSCJAG00000034075 Callithrix jacchus ENSCJAG00000034075 I 0.867
LOC100392590 Callithrix jacchus ENSCJAG00000018590 I 0.862
ENSORLG00000005176 Oryzias latipes ENSORLG00000005176 I 0.851
Pcbp1 Mus musculus ENSMUSG00000051695 D 0.851
PCBP1_RABIT Oryctolagus cuniculus ENSOCUG00000003634 I 0.851
LOC100050579 Equus caballus ENSECAG00000002544 I 0.851
PCBP1 Homo sapiens ENSG00000169564 D 0.851
PCBP1 Gorilla gorilla ENSGGOG00000028130 I 0.851
PCBP1 Myotis lucifugus ENSMLUG00000014173 I 0.851
PCBP1_BOVIN Bos taurus ENSBTAG00000008985 I 0.851
Ame_R002707 Ailuropoda melanoleuca Ame_R002707 I 0.851
Pcbp1 Rattus norvegicus ENSRNOG00000017708 I 0.851
ENSPPYG00000012328 Pongo pygmaeus ENSPPYG00000012328 I 0.851
PCBP1 Pan troglodytes ENSPTRG00000012025 I 0.851
PCBP1 Cavia porcellus ENSCPOG00000013511 I 0.851
ENSGACG00000006681 Gasterosteus aculeatus ENSGACG00000006681 I 0.846
ENSGACG00000003197 Gasterosteus aculeatus ENSGACG00000003197 I 0.846
A6MKZ3_CALJA Callithrix jacchus ENSCJAG00000022539 I 0.846
ENSTRUG00000009361 Takifugu rubripes ENSTRUG00000009361 I 0.846
PCBP1 Tetraodon nigroviridis ENSTNIG00000012585 I 0.840
ENSORLG00000012872 Oryzias latipes ENSORLG00000012872 I 0.840
ENSTRUG00000011419 Takifugu rubripes ENSTRUG00000011419 I 0.835
PCBP3 Felis catus ENSFCAG00000014812 I 0.835
PCBP3 Myotis lucifugus ENSMLUG00000003074 I 0.835
ENSORLG00000014385 Oryzias latipes ENSORLG00000014385 I 0.830
PCBP1 Canis familiaris ENSCAFG00000013845 I 0.824
PCBP1 Callithrix jacchus ENSCJAG00000004017 I 0.824
PCBP2 Tarsius syrichta ENSTSYG00000009771 I 0.824
LOC100409398 Callithrix jacchus ENSCJAG00000007694 I 0.814
ENSMODG00000017748 Monodelphis domestica ENSMODG00000017748 I 0.798
PCBP3 Tetraodon nigroviridis ENSTNIG00000008872 I 0.795
PCBP3 Pteropus vampyrus ENSPVAG00000000832 I 0.793
PCBP2 Echinops telfairi ENSETEG00000014741 I 0.789
PCBP2 Macropus eugenii ENSMEUG00000001887 I 0.787
ENSGACG00000003044 Gasterosteus aculeatus ENSGACG00000003044 I 0.774
Ame_R011627 Ailuropoda melanoleuca Ame_R011627 I 0.771
PCBP4 Gasterosteus aculeatus ENSGACG00000002664 I 0.767
PCBP4 Takifugu rubripes ENSTRUG00000007426 I 0.767
D4ADH2_RAT Rattus norvegicus ENSRNOG00000039295 I 0.767
estExt_gwp.C_3950051 Branchiostoma floridae estExt_gwp.C_3950051 I 0.762
fgenesh2_pg.scaffold_166000022 Branchiostoma floridae fgenesh2_pg.scaffold_166000022 I 0.762
ENSRNOG00000019487 Rattus norvegicus ENSRNOG00000019487 I 0.762
ENSTRUG00000017789 Takifugu rubripes ENSTRUG00000017789 I 0.758
PCBP4 Anolis carolinensis ENSACAG00000011701 I 0.758
PCBP4 Tetraodon nigroviridis ENSTNIG00000017887 I 0.757
PCBP3 Procavia capensis ENSPCAG00000001454 I 0.745
PCBP4 Taeniopygia guttata ENSTGUG00000006393 I 0.742
PCBP4 Ornithorhynchus anatinus ENSOANG00000014110 I 0.742
PCBP3 Echinops telfairi ENSETEG00000015988 I 0.741
PCBP2 Myotis lucifugus ENSMLUG00000009971 I 0.739
PCBP4 Cavia porcellus ENSCPOG00000014617 I 0.737
PCBP4 Canis familiaris ENSCAFG00000010019 I 0.732
PCBP4_BOVIN Bos taurus ENSBTAG00000018622 I 0.732
Pcbp4 Rattus norvegicus ENSRNOG00000012406 I 0.732
PCBP4 Homo sapiens ENSG00000090097 I 0.732
A6MK33_CALJA Callithrix jacchus ENSCJAG00000005783 I 0.732
LOC100060660 Equus caballus ENSECAG00000024218 I 0.732
PCBP4 Pan troglodytes ENSPTRG00000014983 I 0.732
PCBP4 Oryctolagus cuniculus ENSOCUG00000025336 I 0.732
ENSPPYG00000013822 Pongo pygmaeus ENSPPYG00000013822 I 0.732
Pcbp4 Mus musculus ENSMUSG00000023495 I 0.732
PCBP4 Gorilla gorilla ENSGGOG00000012474 I 0.732
PCBP4 Macaca mulatta ENSMMUG00000022205 I 0.732
fgenesh1_pm.C_scaffold_76000004 Capitella teleta fgenesh1_pm.C_scaffold_76000004 I 0.730
nasonia_NCBI_hmm938274 Nasonia vitripennis nasonia_NCBI_hmm938274 I 0.719
PCBP4 Oryzias latipes ENSORLG00000003061 I 0.714
PASA_GEN_0700132 Daphnia pulex PASA_GEN_0700132 I 0.714
ENSMODG00000020653 Monodelphis domestica ENSMODG00000020653 I 0.704
PCBP1 Taeniopygia guttata ENSTGUG00000016232 I 0.702
PCBP4 Monodelphis domestica ENSMODG00000011790 I 0.700