XM_002885313.1 (Arabidopsis lyrata)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 fgenesh1_pg.C_scaffold_3001929 T24358_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_scaffold_3001929 PUF 642 666
fgenesh1_pg.C_scaffold_3001929 PUF 668 702
fgenesh1_pg.C_scaffold_3001929 PUF 704 738
fgenesh1_pg.C_scaffold_3001929 PUF 740 765
fgenesh1_pg.C_scaffold_3001929 PUF 776 810
fgenesh1_pg.C_scaffold_3001929 PUF 813 847
fgenesh1_pg.C_scaffold_3001929 PUF 849 883
fgenesh1_pg.C_scaffold_3001929 PUF 891 924

Links

Other PUF family RBPs
Other Arabidopsis lyrata RBPs

10 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
APUM5 Arabidopsis thaliana AT3G20250-TAIR-G N 0.963
mgf006786m Mimulus guttatus mgf006786m N 0.744
30169.m006300 Ricinus communis 30169.m006300 N 0.743
ppa016404m Prunus persica ppa016404m N 0.737
MDP0000277305 Malus x domestica MDP0000277305 N 0.736
cassava9350.m1 Manihot esculenta cassava9350.m1 N 0.736
Cucsa.149730 Cucumis sativus Cucsa.149730 N 0.729
B9HK27_POPTR Populus trichocarpa POPTR_0008s00490 N 0.728
MDP0000313902 Malus x domestica MDP0000313902 N 0.721
GSVIVG00029553001 Vitis vinifera GSVIVG00029553001 N 0.719