APUM5 (Arabidopsis thaliana)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 AT3G20250-TAIR-G T24023_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
AT3G20250.1-P PUF 628 662
AT3G20250.1-P PUF 664 698
AT3G20250.1-P PUF 700 734
AT3G20250.1-P PUF 736 761
AT3G20250.1-P PUF 772 806
AT3G20250.1-P PUF 809 843
AT3G20250.1-P PUF 845 879
AT3G20250.1-P PUF 887 920

Links

Other PUF family RBPs
Other Arabidopsis thaliana RBPs

19 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002885313.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3001929 N 0.963
mgf006786m Mimulus guttatus mgf006786m N 0.772
30169.m006300 Ricinus communis 30169.m006300 N 0.771
ppa016404m Prunus persica ppa016404m N 0.769
MDP0000277305 Malus x domestica MDP0000277305 N 0.764
cassava9350.m1 Manihot esculenta cassava9350.m1 N 0.761
Cucsa.149730 Cucumis sativus Cucsa.149730 N 0.761
GSVIVG00029553001 Vitis vinifera GSVIVG00029553001 N 0.751
B9HK27_POPTR Populus trichocarpa POPTR_0008s00490 N 0.750
MDP0000313902 Malus x domestica MDP0000313902 N 0.746
GSVIVG00031557001 Vitis vinifera GSVIVG00031557001 N 0.723
ppa000898m Prunus persica ppa000898m N 0.722
PK11972.1 Cannabis sativa PK11972.1 N 0.720
MDP0000265231 Malus x domestica MDP0000265231 N 0.720
LOC_Os08g40830 Oryza sativa LOC_Os08g40830 N 0.718
BGIOSIBCE028530 Oryza indica BGIOSIBCE028530 N 0.718
PK12245.1 Cannabis sativa PK12245.1 N 0.715
Glyma09g06460.1 Glycine max Glyma09g06460.1 N 0.709
Glyma15g17680.1 Glycine max Glyma15g17680.1 N 0.709