CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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APUM5
(
Arabidopsis thaliana
)
PUF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00806 (PUF)
IPR001313
AT3G20250-TAIR-G
T24023_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT3G20250.1-P
PUF
628
662
DIAGRVVEFSVDQHGSRFIQQKLEHCSDEEKASVF
AT3G20250.1-P
PUF
664
698
EVLPQASKLMTDVFGNYVIQKFIEHGTPAQREELV
AT3G20250.1-P
PUF
700
734
QLAGQMVSLSLQMYGCRVIQKALEVIDVDQKTELI
AT3G20250.1-P
PUF
736
761
ELDGNVLKCVRDQNGNHVIQKCIESM
AT3G20250.1-P
PUF
772
806
AFRGQVATLSTHPYGCRVIQRILEHCSDDEETHCI
AT3G20250.1-P
PUF
809
843
EILESAFALAHDQYGNYVTQHVLERGKPDERRQII
AT3G20250.1-P
PUF
845
879
KLTGNVVQMSQHKYASNVVEKCLEHADSTEREFLI
AT3G20250.1-P
PUF
887
920
EEDNHLLAMMKDQFANYVVQKVLEISKDQQREIL
Links
Other
PUF
family RBPs
Other
Arabidopsis thaliana
RBPs
19 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
XM_002885313.1
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_3001929
N
0.963
mgf006786m
Mimulus guttatus
mgf006786m
N
0.772
30169.m006300
Ricinus communis
30169.m006300
N
0.771
ppa016404m
Prunus persica
ppa016404m
N
0.769
MDP0000277305
Malus x domestica
MDP0000277305
N
0.764
cassava9350.m1
Manihot esculenta
cassava9350.m1
N
0.761
Cucsa.149730
Cucumis sativus
Cucsa.149730
N
0.761
GSVIVG00029553001
Vitis vinifera
GSVIVG00029553001
N
0.751
B9HK27_POPTR
Populus trichocarpa
POPTR_0008s00490
N
0.750
MDP0000313902
Malus x domestica
MDP0000313902
N
0.746
GSVIVG00031557001
Vitis vinifera
GSVIVG00031557001
N
0.723
ppa000898m
Prunus persica
ppa000898m
N
0.722
PK11972.1
Cannabis sativa
PK11972.1
N
0.720
MDP0000265231
Malus x domestica
MDP0000265231
N
0.720
LOC_Os08g40830
Oryza sativa
LOC_Os08g40830
N
0.718
BGIOSIBCE028530
Oryza indica
BGIOSIBCE028530
N
0.718
PK12245.1
Cannabis sativa
PK12245.1
N
0.715
Glyma09g06460.1
Glycine max
Glyma09g06460.1
N
0.709
Glyma15g17680.1
Glycine max
Glyma15g17680.1
N
0.709