Cucsa.149730 (Cucumis sativus)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 Cucsa.149730 T24713_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.149730.1 PUF 686 720
Cucsa.149730.1 PUF 722 756
Cucsa.149730.1 PUF 758 792
Cucsa.149730.1 PUF 794 828
Cucsa.149730.1 PUF 830 864
Cucsa.149730.1 PUF 867 901
Cucsa.149730.1 PUF 903 937
Cucsa.149730.1 PUF 948 979
Cucsa.149730.2 PUF 686 720
Cucsa.149730.2 PUF 722 756
Cucsa.149730.2 PUF 758 792
Cucsa.149730.2 PUF 794 828
Cucsa.149730.2 PUF 830 864
Cucsa.149730.2 PUF 867 901
Cucsa.149730.2 PUF 903 937
Cucsa.149730.2 PUF 948 979
Cucsa.149730.3 PUF 686 720
Cucsa.149730.3 PUF 722 756
Cucsa.149730.3 PUF 758 792
Cucsa.149730.3 PUF 794 828
Cucsa.149730.3 PUF 830 864
Cucsa.149730.3 PUF 867 901
Cucsa.149730.3 PUF 903 937
Cucsa.149730.3 PUF 948 979
Cucsa.149730.4 PUF 686 720
Cucsa.149730.4 PUF 722 756
Cucsa.149730.4 PUF 758 792
Cucsa.149730.4 PUF 794 828
Cucsa.149730.4 PUF 830 864
Cucsa.149730.4 PUF 867 901
Cucsa.149730.4 PUF 903 937
Cucsa.149730.4 PUF 948 979
Cucsa.149730.5 PUF 686 720
Cucsa.149730.5 PUF 722 756
Cucsa.149730.5 PUF 758 792
Cucsa.149730.5 PUF 794 828
Cucsa.149730.5 PUF 830 864
Cucsa.149730.5 PUF 867 901
Cucsa.149730.5 PUF 903 937
Cucsa.149730.5 PUF 948 979
Cucsa.149730.6 PUF 656 690
Cucsa.149730.6 PUF 692 726
Cucsa.149730.6 PUF 728 762
Cucsa.149730.6 PUF 764 798
Cucsa.149730.6 PUF 800 834
Cucsa.149730.6 PUF 837 871
Cucsa.149730.6 PUF 873 907
Cucsa.149730.6 PUF 918 949

Links

Other PUF family RBPs
Other Cucumis sativus RBPs

35 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000277305 Malus x domestica MDP0000277305 N 0.829
30169.m006300 Ricinus communis 30169.m006300 N 0.825
GSVIVG00029553001 Vitis vinifera GSVIVG00029553001 N 0.821
B9HK27_POPTR Populus trichocarpa POPTR_0008s00490 N 0.814
ppa016404m Prunus persica ppa016404m N 0.808
cassava9350.m1 Manihot esculenta cassava9350.m1 N 0.807
MDP0000313902 Malus x domestica MDP0000313902 N 0.806
GSVIVG00031557001 Vitis vinifera GSVIVG00031557001 N 0.798
mgf006786m Mimulus guttatus mgf006786m N 0.794
MDP0000265231 Malus x domestica MDP0000265231 N 0.784
PK12245.1 Cannabis sativa PK12245.1 N 0.770
ppa000898m Prunus persica ppa000898m N 0.770
Glyma09g06460.1 Glycine max Glyma09g06460.1 N 0.768
GRMZM2G035118 Zea mays GRMZM2G035118 N 0.765
Glyma15g17680.1 Glycine max Glyma15g17680.1 N 0.764
LOC_Os08g40830 Oryza sativa LOC_Os08g40830 N 0.762
BGIOSIBCE028530 Oryza indica BGIOSIBCE028530 N 0.762
APUM5 Arabidopsis thaliana AT3G20250-TAIR-G N 0.761
GRMZM2G449123 Zea mays GRMZM2G449123 N 0.761
cassava43126.valid.m1 Manihot esculenta cassava43126.valid.m1 N 0.759
Sb07g026995 Sorghum bicolor Sb07g026995 N 0.754
PK11972.1 Cannabis sativa PK11972.1 N 0.750
Glyma13g00670.1 Glycine max Glyma13g00670.1 N 0.746
POPTR_0022s00840 Populus trichocarpa POPTR_0022s00840 N 0.745
BRADI3G40520 Brachypodium distachyon BRADI3G40520 N 0.742
Medtr2g041730 Medicago truncatula Medtr2g041730 N 0.739
mgf002285m Mimulus guttatus mgf002285m N 0.739
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.730
XM_002885313.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3001929 N 0.729
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.719
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.712
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.703
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.701
ppa000731m Prunus persica ppa000731m N 0.700