30169.m006300 (Ricinus communis)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 30169.m006300 T24683_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
30169.m006300 PUF 675 709
30169.m006300 PUF 711 745
30169.m006300 PUF 747 781
30169.m006300 PUF 783 817
30169.m006300 PUF 820 853
30169.m006300 PUF 856 890
30169.m006300 PUF 892 926
30169.m006300 PUF 934 968

Links

Other PUF family RBPs
Other Ricinus communis RBPs

33 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava9350.m1 Manihot esculenta cassava9350.m1 N 0.928
B9HK27_POPTR Populus trichocarpa POPTR_0008s00490 N 0.850
MDP0000277305 Malus x domestica MDP0000277305 N 0.839
GSVIVG00029553001 Vitis vinifera GSVIVG00029553001 N 0.836
ppa016404m Prunus persica ppa016404m N 0.829
Cucsa.149730 Cucumis sativus Cucsa.149730 N 0.825
MDP0000313902 Malus x domestica MDP0000313902 N 0.821
mgf006786m Mimulus guttatus mgf006786m N 0.811
PK11972.1 Cannabis sativa PK11972.1 N 0.793
GSVIVG00031557001 Vitis vinifera GSVIVG00031557001 N 0.784
PK12245.1 Cannabis sativa PK12245.1 N 0.780
ppa000898m Prunus persica ppa000898m N 0.777
MDP0000265231 Malus x domestica MDP0000265231 N 0.773
APUM5 Arabidopsis thaliana AT3G20250-TAIR-G N 0.771
LOC_Os08g40830 Oryza sativa LOC_Os08g40830 N 0.762
BGIOSIBCE028530 Oryza indica BGIOSIBCE028530 N 0.762
Glyma09g06460.1 Glycine max Glyma09g06460.1 N 0.755
cassava43126.valid.m1 Manihot esculenta cassava43126.valid.m1 N 0.751
GRMZM2G035118 Zea mays GRMZM2G035118 N 0.751
Glyma13g00670.1 Glycine max Glyma13g00670.1 N 0.748
Glyma15g17680.1 Glycine max Glyma15g17680.1 N 0.748
Sb07g026995 Sorghum bicolor Sb07g026995 N 0.744
XM_002885313.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3001929 N 0.743
POPTR_0022s00840 Populus trichocarpa POPTR_0022s00840 N 0.740
GRMZM2G449123 Zea mays GRMZM2G449123 N 0.736
mgf002285m Mimulus guttatus mgf002285m N 0.723
BRADI3G40520 Brachypodium distachyon BRADI3G40520 N 0.722
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.719
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.712
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.712
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.712
Medtr2g041730 Medicago truncatula Medtr2g041730 N 0.706
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.701