mgf006786m (Mimulus guttatus)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 mgf006786m T24925_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
mgf006786m PUF 432 466
mgf006786m PUF 468 501
mgf006786m PUF 504 539
mgf006786m PUF 540 574
mgf006786m PUF 576 606
mgf006786m PUF 613 647
mgf006786m PUF 649 683
mgf006786m PUF 691 725

Links

Other PUF family RBPs
Other Mimulus guttatus RBPs

31 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava9350.m1 Manihot esculenta cassava9350.m1 N 0.811
30169.m006300 Ricinus communis 30169.m006300 N 0.811
B9HK27_POPTR Populus trichocarpa POPTR_0008s00490 N 0.811
ppa016404m Prunus persica ppa016404m N 0.808
MDP0000277305 Malus x domestica MDP0000277305 N 0.804
GSVIVG00029553001 Vitis vinifera GSVIVG00029553001 N 0.798
ppa000898m Prunus persica ppa000898m N 0.794
Cucsa.149730 Cucumis sativus Cucsa.149730 N 0.794
MDP0000265231 Malus x domestica MDP0000265231 N 0.791
MDP0000313902 Malus x domestica MDP0000313902 N 0.786
GSVIVG00031557001 Vitis vinifera GSVIVG00031557001 N 0.784
PK12245.1 Cannabis sativa PK12245.1 N 0.777
APUM5 Arabidopsis thaliana AT3G20250-TAIR-G N 0.772
Glyma13g00670.1 Glycine max Glyma13g00670.1 N 0.766
PK11972.1 Cannabis sativa PK11972.1 N 0.765
Glyma09g06460.1 Glycine max Glyma09g06460.1 N 0.752
Glyma15g17680.1 Glycine max Glyma15g17680.1 N 0.748
mgf002285m Mimulus guttatus mgf002285m N 0.748
XM_002885313.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3001929 N 0.744
POPTR_0022s00840 Populus trichocarpa POPTR_0022s00840 N 0.738
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.732
LOC_Os08g40830 Oryza sativa LOC_Os08g40830 N 0.727
GRMZM2G035118 Zea mays GRMZM2G035118 N 0.727
BGIOSIBCE028530 Oryza indica BGIOSIBCE028530 N 0.727
cassava43126.valid.m1 Manihot esculenta cassava43126.valid.m1 N 0.723
Sb07g026995 Sorghum bicolor Sb07g026995 N 0.723
Medtr2g041730 Medicago truncatula Medtr2g041730 N 0.716
GRMZM2G449123 Zea mays GRMZM2G449123 N 0.712
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.711
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.707
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.704