CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GSVIVG00029553001
(
Vitis vinifera
)
PUF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00806 (PUF)
IPR001313
GSVIVG00029553001
T24374_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
GSVIVT00029553001
PUF
697
731
DIAGRTVEFSVDQHGSRFIQQKLENCSGEEKASVF
GSVIVT00029553001
PUF
733
767
EVLPHASRLMTDVFGNYVIQKFFEHGTPEQRRELA
GSVIVT00029553001
PUF
769
803
QLAGQMIPLSLQMYGCRVIQKALEVIELDQKTQLV
GSVIVT00029553001
PUF
805
839
ELDGHVIRCVRDQNGNHVIQKCIECIPTEKIGFII
GSVIVT00029553001
PUF
841
876
AFKGQVTVLSSHPYGCRVIQRVLEHCSEVSQSQFIV
GSVIVT00029553001
PUF
878
912
EILESAYVLAEDQYGNYVTQHVLERGNPHERSQII
GSVIVT00029553001
PUF
914
948
KLTGKIVQMSQHKYASNVIEKCLEYGSTSECELLI
GSVIVT00029553001
PUF
958
990
NDNLLVMMKDQFANYVVQKILETSNDKQREILL
Links
Other
PUF
family RBPs
Other
Vitis vinifera
RBPs
32 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
30169.m006300
Ricinus communis
30169.m006300
N
0.836
MDP0000277305
Malus x domestica
MDP0000277305
N
0.836
ppa016404m
Prunus persica
ppa016404m
N
0.836
cassava9350.m1
Manihot esculenta
cassava9350.m1
N
0.826
MDP0000313902
Malus x domestica
MDP0000313902
N
0.824
Cucsa.149730
Cucumis sativus
Cucsa.149730
N
0.821
B9HK27_POPTR
Populus trichocarpa
POPTR_0008s00490
N
0.808
GSVIVG00031557001
Vitis vinifera
GSVIVG00031557001
N
0.801
mgf006786m
Mimulus guttatus
mgf006786m
N
0.798
ppa000898m
Prunus persica
ppa000898m
N
0.794
MDP0000265231
Malus x domestica
MDP0000265231
N
0.791
GRMZM2G035118
Zea mays
GRMZM2G035118
N
0.777
BGIOSIBCE028530
Oryza indica
BGIOSIBCE028530
N
0.777
LOC_Os08g40830
Oryza sativa
LOC_Os08g40830
N
0.777
Glyma09g06460.1
Glycine max
Glyma09g06460.1
N
0.776
cassava43126.valid.m1
Manihot esculenta
cassava43126.valid.m1
N
0.773
PK12245.1
Cannabis sativa
PK12245.1
N
0.773
Glyma15g17680.1
Glycine max
Glyma15g17680.1
N
0.772
Sb07g026995
Sorghum bicolor
Sb07g026995
N
0.759
GRMZM2G449123
Zea mays
GRMZM2G449123
N
0.758
APUM5
Arabidopsis thaliana
AT3G20250-TAIR-G
N
0.751
PK11972.1
Cannabis sativa
PK11972.1
N
0.751
POPTR_0022s00840
Populus trichocarpa
POPTR_0022s00840
N
0.748
Glyma13g00670.1
Glycine max
Glyma13g00670.1
N
0.747
BRADI3G40520
Brachypodium distachyon
BRADI3G40520
N
0.739
Medtr2g041730
Medicago truncatula
Medtr2g041730
N
0.737
mgf002285m
Mimulus guttatus
mgf002285m
N
0.730
gw1.2.45.1
Selaginella moellendorfii
gw1.2.45.1
N
0.725
e_gw1.96.1.1
Physcomitrella patens
e_gw1.96.1.1
N
0.721
XM_002885313.1
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_3001929
N
0.719
e_gw1.2.1396.1
Selaginella moellendorfii
e_gw1.2.1396.1
N
0.700
estExt_Genewise1.C_350182
Physcomitrella patens
estExt_Genewise1.C_350182
N
0.700