GSVIVG00029553001 (Vitis vinifera)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 GSVIVG00029553001 T24374_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GSVIVT00029553001 PUF 697 731
GSVIVT00029553001 PUF 733 767
GSVIVT00029553001 PUF 769 803
GSVIVT00029553001 PUF 805 839
GSVIVT00029553001 PUF 841 876
GSVIVT00029553001 PUF 878 912
GSVIVT00029553001 PUF 914 948
GSVIVT00029553001 PUF 958 990

Links

Other PUF family RBPs
Other Vitis vinifera RBPs

32 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30169.m006300 Ricinus communis 30169.m006300 N 0.836
MDP0000277305 Malus x domestica MDP0000277305 N 0.836
ppa016404m Prunus persica ppa016404m N 0.836
cassava9350.m1 Manihot esculenta cassava9350.m1 N 0.826
MDP0000313902 Malus x domestica MDP0000313902 N 0.824
Cucsa.149730 Cucumis sativus Cucsa.149730 N 0.821
B9HK27_POPTR Populus trichocarpa POPTR_0008s00490 N 0.808
GSVIVG00031557001 Vitis vinifera GSVIVG00031557001 N 0.801
mgf006786m Mimulus guttatus mgf006786m N 0.798
ppa000898m Prunus persica ppa000898m N 0.794
MDP0000265231 Malus x domestica MDP0000265231 N 0.791
GRMZM2G035118 Zea mays GRMZM2G035118 N 0.777
BGIOSIBCE028530 Oryza indica BGIOSIBCE028530 N 0.777
LOC_Os08g40830 Oryza sativa LOC_Os08g40830 N 0.777
Glyma09g06460.1 Glycine max Glyma09g06460.1 N 0.776
cassava43126.valid.m1 Manihot esculenta cassava43126.valid.m1 N 0.773
PK12245.1 Cannabis sativa PK12245.1 N 0.773
Glyma15g17680.1 Glycine max Glyma15g17680.1 N 0.772
Sb07g026995 Sorghum bicolor Sb07g026995 N 0.759
GRMZM2G449123 Zea mays GRMZM2G449123 N 0.758
APUM5 Arabidopsis thaliana AT3G20250-TAIR-G N 0.751
PK11972.1 Cannabis sativa PK11972.1 N 0.751
POPTR_0022s00840 Populus trichocarpa POPTR_0022s00840 N 0.748
Glyma13g00670.1 Glycine max Glyma13g00670.1 N 0.747
BRADI3G40520 Brachypodium distachyon BRADI3G40520 N 0.739
Medtr2g041730 Medicago truncatula Medtr2g041730 N 0.737
mgf002285m Mimulus guttatus mgf002285m N 0.730
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.725
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.721
XM_002885313.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3001929 N 0.719
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.700
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.700