CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GF15172
(
Drosophila ananassae
)
RanBP ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00641 (zf-RanBP)
PF00076 (RRM_1)
IPR001876
IPR000504
FBgn0092197
T25693_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0118364
RRM
240
312
IIIFGLSKQITKADIMSELIKVNMEPACIRIIRKHGADSSRGIAFVEFNTVEEAKQWMDITQGVISLGDQRLT
FBpp0118364
RanBP ZF
319
348
RIQDWNCNKCGVCNFKFRFYCFVCKTSREE
FBpp0118364
RRM
371
437
IMLRNLDALANEESVLTALQQHIPDLAKTVSKVLISRDTLTQASRGICYLNFDTLVDSMNTYNALTA
Links
Other
RanBP ZF,RRM
family RBPs
Other
Drosophila ananassae
RBPs
9 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GG24776
Drosophila erecta
FBgn0116906
N
0.849
GE17418
Drosophila yakuba
FBgn0234885
N
0.843
CG4887
Drosophila melanogaster
FBgn0031318
N
0.807
GM16803
Drosophila sechellia
FBgn0171716
N
0.807
GF15173
Drosophila ananassae
FBgn0092198
N
0.771
GK14959
Drosophila willistoni
FBgn0216964
N
0.750
GI14534
Drosophila mojavensis
FBgn0137286
N
0.739
GJ16951
Drosophila virilis
FBgn0204129
N
0.734
GH11401
Drosophila grimshawi
FBgn0118881
N
0.720