CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GG24776
(
Drosophila erecta
)
RanBP ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00641 (zf-RanBP)
PF00076 (RRM_1)
IPR001876
IPR000504
FBgn0116906
T25699_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0143322
RRM
248
320
IIIFGLTKEMTRADIMSELIKVNMEPACIRIIRKQGTDSSRGIAFVEFNTVEEAKQWMDITQGVLKLNDERVS
FBpp0143322
RanBP ZF
327
356
RIQDWNCNKCGVCNFKFRFYCFVCKTSRED
FBpp0143322
RRM
379
447
IMLRNLDALTNEEAVLTALQNHLKDLSKTVSKVLISRDSLTQASRGICYLHFDTLVDSMNVHNALTSLD
Links
Other
RanBP ZF,RRM
family RBPs
Other
Drosophila erecta
RBPs
9 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GE17418
Drosophila yakuba
FBgn0234885
N
0.988
CG4887
Drosophila melanogaster
FBgn0031318
N
0.934
GM16803
Drosophila sechellia
FBgn0171716
N
0.934
GF15172
Drosophila ananassae
FBgn0092197
N
0.849
GI14534
Drosophila mojavensis
FBgn0137286
N
0.775
GF15173
Drosophila ananassae
FBgn0092198
N
0.768
GJ16951
Drosophila virilis
FBgn0204129
N
0.755
GH11401
Drosophila grimshawi
FBgn0118881
N
0.748
GK14959
Drosophila willistoni
FBgn0216964
N
0.746