CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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YALI0F21835g
(
Yarrowia lipolytica
)
RanBP ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00641 (zf-RanBP)
PF00076 (RRM_1)
IPR001876
IPR000504
YALI0F21835g
T25911_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
YALI0F21835g
RRM
215
285
LHLENLPLDTTQSELESWFIQHGGRPIGFWTMRTPEQHKPTGFGFAMFASHEEAVEALALNGRALNDKVVE
YALI0F21835g
RanBP ZF
312
336
RPGDWTCQVCGFSNFQRRTACFRCN
YALI0F21835g
RanBP ZF
408
439
RAGDWKCGKNGCSYHNFAKNVACLKCGASRGE
Links
Other
RanBP ZF,RRM
family RBPs
Other
Yarrowia lipolytica
RBPs
48 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_fgenesh1_pm.C_30636
Myceliophthora thermophila
estExt_fgenesh1_pm.C_30636
N
0.763
CHGG_07745
Chaetomium globosum
CHGG_07745
N
0.756
estExt_Genewise1Plus.C_130308
Cryphonectria parasitica
estExt_Genewise1Plus.C_130308
N
0.756
estExt_fgenesh2_pm.C_20549
Thielavia terrestris
estExt_fgenesh2_pm.C_20549
N
0.756
estExt_fgenesh1_pm.C_10481
Trichoderma reesei
estExt_fgenesh1_pm.C_10481
N
0.750
estExt_fgenesh1_pg.C_10521
Neurospora tetrasperma
estExt_fgenesh1_pg.C_10521
N
0.750
NCU06684
Neurospora crassa
NCU06684
N
0.750
e_gw1.4.1358.1
Trichoderma virens
e_gw1.4.1358.1
N
0.750
estExt_Genewise1.C_11720
Neurospora discreta
estExt_Genewise1.C_11720
N
0.750
VDAG_01381
Verticillium dahliae
VDAG_01381
N
0.750
estExt_Genewise1.C_sca_6_chr9_2_00515
Nectria haematococca
estExt_Genewise1.C_sca_6_chr9_2_00515
N
0.750
FOXG_02027
Fusarium oxysporum
FOXG_02027
N
0.750
GSTUMT00003821001
Tuber melanosporum
GSTUMT00003821001
N
0.750
MGG_07327
Magnaporthe oryzae
MGG_07327
N
0.750
GLRG_04960
Colletotrichum graminicola
GLRG_04960
N
0.750
ANIA_08055
Aspergillus nidulans
CADANIAG00004081
N
0.748
estExt_Genewise1.C_70493
Cochliobolus heterostrophus C5
estExt_Genewise1.C_70493
N
0.744
SNOG_15524
Stagonospora nodorum
SNOG_15524
N
0.744
EAT77189.2
Phaeosphaeria nodorum
EAT77189.2
N
0.744
AB01016.1
Alternaria brassicicola
AB01016.1
N
0.744
SS1G_01772
Sclerotinia sclerotiorum
SS1G_01772
N
0.744
BC1G_02626
Botrytis cinerea
BC1G_02626
N
0.744
NFIA_039950
Neosartorya fischeri
CADNFIAG00002962
N
0.742
fgenesh1_pm.00866_#_655
Aspergillus carbonarius
fgenesh1_pm.00866_#_655
N
0.742
ATEG_09171
Aspergillus terreus
CADATEAG00003372
N
0.742
Pc21g14870
Penicillium chrysogenum
Pc21g14870
N
0.742
AFUA_5G02160
Aspergillus fumigatus
CADAFUAG00002676
N
0.742
AO090102000274
Aspergillus oryzae
CADAORAG00009617
N
0.742
ACLA_003080
Aspergillus clavatus
CADACLAG00000382
N
0.742
AFLA_003900
Aspergillus flavus
CADAFLAG00010456
N
0.742
An02g10780
Aspergillus niger
CADANGAG00002596
N
0.742
PTRG_11004
Pyrenophora tritici repentis
PTRG_11004
N
0.737
PMAA_081320
Penicillium marneffei
PMAA_081320
N
0.735
TERG_04360
Trichophyton rubrum
TERG_04360
N
0.733
TEQG_06114
Trichophyton equinum
TEQG_06114
N
0.733
TRV_00689
Trichophyton verrucosum
TRV_00689
N
0.733
ARB_00799
Arthroderma benhamiae
ARB_00799
N
0.733
MGYG_04027
Microsporum gypseum
MGYG_04027
N
0.733
MCYG_02047
Microsporum canis
MCYG_02047
N
0.733
TESG_06793
Trichophyton tonsurans
TESG_06793
N
0.733
estExt_Genewise1.C_50445
Mycosphaerella fijiensis
estExt_Genewise1.C_50445
N
0.729
estExt_fgenesh1_pm.C_chr_80348
Mycosphaerella graminicola
estExt_fgenesh1_pm.C_chr_80348
N
0.729
Pa_2_11350
Podospora anserina
Pa_2_11350
N
0.727
BDBG_01534
Blastomyces dermatitidis
BDBG_01534
N
0.727
UREG_03978
Uncinocarpus reesii
UREG_03978
N
0.725
CIMG_06432
Coccidioides immitis
CIMG_06432
N
0.725
CPSG_00638
Coccidioides posadasii
CPSG_00638
N
0.725
PABG_00314
Paracoccidioides brasiliensis
PABG_00314
N
0.720