CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
GSTUMT00003821001
(
Tuber melanosporum
)
RanBP ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00641 (zf-RanBP)
PF00076 (RRM_1)
IPR001876
IPR000504
GSTUMT00003821001
T25879_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
GSTUMT00003821001
RRM
245
315
LHMSGLPHDTTQSELESWFTQYGGRPIAFWTLRTPDQHKPTGTGFAVFSSHEEAAESLCMNGRALNEKAIE
GSTUMT00003821001
RanBP ZF
342
370
RPGDWTCPSCGFSNFQRRTACFRCSFPAV
GSTUMT00003821001
RanBP ZF
419
450
RAGDWKCGSDGCGYHNFAKNVSCLRCGASRAG
Links
Other
RanBP ZF,RRM
family RBPs
Other
Tuber melanosporum
RBPs
49 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BC1G_02626
Botrytis cinerea
BC1G_02626
N
0.962
NCU06684
Neurospora crassa
NCU06684
N
0.962
estExt_fgenesh1_pg.C_10521
Neurospora tetrasperma
estExt_fgenesh1_pg.C_10521
N
0.962
PMAA_081320
Penicillium marneffei
PMAA_081320
N
0.962
estExt_Genewise1.C_11720
Neurospora discreta
estExt_Genewise1.C_11720
N
0.962
SS1G_01772
Sclerotinia sclerotiorum
SS1G_01772
N
0.955
estExt_Genewise1.C_sca_6_chr9_2_00515
Nectria haematococca
estExt_Genewise1.C_sca_6_chr9_2_00515
N
0.955
e_gw1.4.1358.1
Trichoderma virens
e_gw1.4.1358.1
N
0.955
FOXG_02027
Fusarium oxysporum
FOXG_02027
N
0.955
estExt_fgenesh1_pm.C_10481
Trichoderma reesei
estExt_fgenesh1_pm.C_10481
N
0.955
estExt_fgenesh2_pm.C_20549
Thielavia terrestris
estExt_fgenesh2_pm.C_20549
N
0.947
VDAG_01381
Verticillium dahliae
VDAG_01381
N
0.947
estExt_fgenesh1_pm.C_30636
Myceliophthora thermophila
estExt_fgenesh1_pm.C_30636
N
0.947
GLRG_04960
Colletotrichum graminicola
GLRG_04960
N
0.947
fgenesh1_pm.00866_#_655
Aspergillus carbonarius
fgenesh1_pm.00866_#_655
N
0.939
CHGG_07745
Chaetomium globosum
CHGG_07745
N
0.939
NFIA_039950
Neosartorya fischeri
CADNFIAG00002962
N
0.939
ACLA_003080
Aspergillus clavatus
CADACLAG00000382
N
0.939
AFLA_003900
Aspergillus flavus
CADAFLAG00010456
N
0.939
AFUA_5G02160
Aspergillus fumigatus
CADAFUAG00002676
N
0.939
ANIA_08055
Aspergillus nidulans
CADANIAG00004081
N
0.939
An02g10780
Aspergillus niger
CADANGAG00002596
N
0.939
Pc21g14870
Penicillium chrysogenum
Pc21g14870
N
0.939
AO090102000274
Aspergillus oryzae
CADAORAG00009617
N
0.939
ATEG_09171
Aspergillus terreus
CADATEAG00003372
N
0.939
SNOG_15524
Stagonospora nodorum
SNOG_15524
N
0.932
estExt_Genewise1.C_70493
Cochliobolus heterostrophus C5
estExt_Genewise1.C_70493
N
0.932
AB01016.1
Alternaria brassicicola
AB01016.1
N
0.932
EAT77189.2
Phaeosphaeria nodorum
EAT77189.2
N
0.932
MGG_07327
Magnaporthe oryzae
MGG_07327
N
0.932
PTRG_11004
Pyrenophora tritici repentis
PTRG_11004
N
0.925
ARB_00799
Arthroderma benhamiae
ARB_00799
N
0.924
TESG_06793
Trichophyton tonsurans
TESG_06793
N
0.924
MCYG_02047
Microsporum canis
MCYG_02047
N
0.924
estExt_Genewise1Plus.C_130308
Cryphonectria parasitica
estExt_Genewise1Plus.C_130308
N
0.924
MGYG_04027
Microsporum gypseum
MGYG_04027
N
0.924
TEQG_06114
Trichophyton equinum
TEQG_06114
N
0.924
BDBG_01534
Blastomyces dermatitidis
BDBG_01534
N
0.924
TERG_04360
Trichophyton rubrum
TERG_04360
N
0.924
TRV_00689
Trichophyton verrucosum
TRV_00689
N
0.924
UREG_03978
Uncinocarpus reesii
UREG_03978
N
0.917
CIMG_06432
Coccidioides immitis
CIMG_06432
N
0.917
CPSG_00638
Coccidioides posadasii
CPSG_00638
N
0.917
PABG_00314
Paracoccidioides brasiliensis
PABG_00314
N
0.917
Pa_2_11350
Podospora anserina
Pa_2_11350
N
0.909
estExt_Genewise1.C_50445
Mycosphaerella fijiensis
estExt_Genewise1.C_50445
N
0.872
estExt_fgenesh1_pm.C_chr_80348
Mycosphaerella graminicola
estExt_fgenesh1_pm.C_chr_80348
N
0.865
FVEG_05191
Fusarium verticillioides
FVEG_05191
N
0.811
YALI0F21835g
Yarrowia lipolytica
YALI0F21835g
N
0.750