CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PMAA_081320
(
Penicillium marneffei
)
RanBP ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00641 (zf-RanBP)
PF00076 (RRM_1)
IPR001876
IPR000504
PMAA_081320
T25899_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PMAA_081320.t1
RRM
255
325
LHMSGLPHDTTQSELESWFTQYGGRPIAFWTLRTPDQHKPTGTGFAVFSSHEEAAESLCMNGRALNEKAIE
PMAA_081320.t1
RanBP ZF
352
380
RPGDWTCPSCGFSNFQRRTACFRCSFPAV
PMAA_081320.t1
RanBP ZF
422
453
RAGDWKCGSEGCGYHNFAKNTNCLRCGAPRSG
Links
Other
RanBP ZF,RRM
family RBPs
Other
Penicillium marneffei
RBPs
49 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ANIA_08055
Aspergillus nidulans
CADANIAG00004081
N
0.970
An02g10780
Aspergillus niger
CADANGAG00002596
N
0.970
AFUA_5G02160
Aspergillus fumigatus
CADAFUAG00002676
N
0.970
AO090102000274
Aspergillus oryzae
CADAORAG00009617
N
0.970
ATEG_09171
Aspergillus terreus
CADATEAG00003372
N
0.970
Pc21g14870
Penicillium chrysogenum
Pc21g14870
N
0.970
fgenesh1_pm.00866_#_655
Aspergillus carbonarius
fgenesh1_pm.00866_#_655
N
0.970
NFIA_039950
Neosartorya fischeri
CADNFIAG00002962
N
0.970
ACLA_003080
Aspergillus clavatus
CADACLAG00000382
N
0.970
AFLA_003900
Aspergillus flavus
CADAFLAG00010456
N
0.970
GSTUMT00003821001
Tuber melanosporum
GSTUMT00003821001
N
0.962
BDBG_01534
Blastomyces dermatitidis
BDBG_01534
N
0.955
CIMG_06432
Coccidioides immitis
CIMG_06432
N
0.947
CPSG_00638
Coccidioides posadasii
CPSG_00638
N
0.947
NCU06684
Neurospora crassa
NCU06684
N
0.947
estExt_Genewise1.C_11720
Neurospora discreta
estExt_Genewise1.C_11720
N
0.947
estExt_fgenesh1_pg.C_10521
Neurospora tetrasperma
estExt_fgenesh1_pg.C_10521
N
0.947
PABG_00314
Paracoccidioides brasiliensis
PABG_00314
N
0.947
UREG_03978
Uncinocarpus reesii
UREG_03978
N
0.947
BC1G_02626
Botrytis cinerea
BC1G_02626
N
0.940
TEQG_06114
Trichophyton equinum
TEQG_06114
N
0.939
ARB_00799
Arthroderma benhamiae
ARB_00799
N
0.939
MCYG_02047
Microsporum canis
MCYG_02047
N
0.939
TRV_00689
Trichophyton verrucosum
TRV_00689
N
0.939
FOXG_02027
Fusarium oxysporum
FOXG_02027
N
0.939
estExt_Genewise1.C_sca_6_chr9_2_00515
Nectria haematococca
estExt_Genewise1.C_sca_6_chr9_2_00515
N
0.939
TESG_06793
Trichophyton tonsurans
TESG_06793
N
0.939
estExt_fgenesh1_pm.C_10481
Trichoderma reesei
estExt_fgenesh1_pm.C_10481
N
0.939
MGYG_04027
Microsporum gypseum
MGYG_04027
N
0.939
TERG_04360
Trichophyton rubrum
TERG_04360
N
0.939
e_gw1.4.1358.1
Trichoderma virens
e_gw1.4.1358.1
N
0.939
SS1G_01772
Sclerotinia sclerotiorum
SS1G_01772
N
0.932
estExt_fgenesh2_pm.C_20549
Thielavia terrestris
estExt_fgenesh2_pm.C_20549
N
0.932
estExt_fgenesh1_pm.C_30636
Myceliophthora thermophila
estExt_fgenesh1_pm.C_30636
N
0.932
VDAG_01381
Verticillium dahliae
VDAG_01381
N
0.932
GLRG_04960
Colletotrichum graminicola
GLRG_04960
N
0.932
EAT77189.2
Phaeosphaeria nodorum
EAT77189.2
N
0.925
estExt_Genewise1.C_70493
Cochliobolus heterostrophus C5
estExt_Genewise1.C_70493
N
0.925
SNOG_15524
Stagonospora nodorum
SNOG_15524
N
0.925
AB01016.1
Alternaria brassicicola
AB01016.1
N
0.925
Pa_2_11350
Podospora anserina
Pa_2_11350
N
0.924
CHGG_07745
Chaetomium globosum
CHGG_07745
N
0.924
PTRG_11004
Pyrenophora tritici repentis
PTRG_11004
N
0.917
MGG_07327
Magnaporthe oryzae
MGG_07327
N
0.917
estExt_Genewise1Plus.C_130308
Cryphonectria parasitica
estExt_Genewise1Plus.C_130308
N
0.917
estExt_fgenesh1_pm.C_chr_80348
Mycosphaerella graminicola
estExt_fgenesh1_pm.C_chr_80348
N
0.857
estExt_Genewise1.C_50445
Mycosphaerella fijiensis
estExt_Genewise1.C_50445
N
0.857
FVEG_05191
Fusarium verticillioides
FVEG_05191
N
0.795
YALI0F21835g
Yarrowia lipolytica
YALI0F21835g
N
0.735