CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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TESG_03203
(
Trichophyton tonsurans
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
TESG_03203
T31163_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
TESG_03203T0
RRM
201
269
VFVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEFKNEESVPLAIQLTGQKLLGIPI
TESG_03203T0
RRM
301
370
LYVGNIHFSITESDLQNVFEPFGELDFVQLQREEAGRSKGYGFVQFRDPNQAREALEKMNGFDLAGRPIR
TESG_03203T0
RRM
517
573
LEDDVRAECEEKYGHVVHISLDPNTQGDIYLKFDRVQGGENAIKGLNGRFFGGRQIS
Links
Other
RRM
family RBPs
Other
Trichophyton tonsurans
RBPs
45 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
TRV_02070
Trichophyton verrucosum
TRV_02070
N
1.000
MGYG_07158
Microsporum gypseum
MGYG_07158
N
1.000
TEQG_08002
Trichophyton equinum
TEQG_08002
N
1.000
ARB_02131
Arthroderma benhamiae
ARB_02131
N
1.000
MCYG_00053
Microsporum canis
MCYG_00053
N
0.995
TERG_08096
Trichophyton rubrum
TERG_08096
N
0.995
HCAG_02257
Histoplasma capsulatum
HCAG_02257
N
0.969
PABG_06048
Paracoccidioides brasiliensis
PABG_06048
N
0.969
BDBG_07521
Blastomyces dermatitidis
BDBG_07521
N
0.964
CPSG_04315
Coccidioides posadasii
CPSG_04315
N
0.954
CIMG_03100
Coccidioides immitis
CIMG_03100
N
0.954
UREG_02855
Uncinocarpus reesii
UREG_02855
N
0.954
PMAA_065980
Penicillium marneffei
PMAA_065980
N
0.949
BC1G_00662
Botrytis cinerea
BC1G_00662
N
0.944
SS1G_00444
Sclerotinia sclerotiorum
SS1G_00444
N
0.939
ATEG_05213
Aspergillus terreus
CADATEAG00005232
N
0.934
NFIA_009510
Neosartorya fischeri
CADNFIAG00001864
N
0.934
AFUA_1G15810
Aspergillus fumigatus
CADAFUAG00006904
N
0.934
ACLA_019550
Aspergillus clavatus
CADACLAG00002508
N
0.929
e_gw1.00042.124.1
Aspergillus carbonarius
e_gw1.00042.124.1
N
0.923
AO090005001118
Aspergillus oryzae
CADAORAG00003032
N
0.923
An01g14180
Aspergillus niger
CADANGAG00001415
N
0.923
AFLA_083600
Aspergillus flavus
CADAFLAG00001140
N
0.923
ANIA_00917
Aspergillus nidulans
CADANIAG00001739
N
0.903
GSTUMT00004251001
Tuber melanosporum
GSTUMT00004251001
N
0.893
estExt_Genewise1Plus.C_100357
Neurospora tetrasperma
estExt_Genewise1Plus.C_100357
N
0.857
estExt_Genewise1Plus.C_160212
Neurospora discreta
estExt_Genewise1Plus.C_160212
N
0.857
Pad-1
Neurospora crassa
NCU03491
N
0.857
Pa_6_4410
Podospora anserina
Pa_6_4410
N
0.852
CHGG_08209
Chaetomium globosum
CHGG_08209
N
0.852
estExt_fgenesh1_pg.C_70696
Myceliophthora thermophila
estExt_fgenesh1_pg.C_70696
N
0.847
estExt_fgenesh2_pm.C_60094
Thielavia terrestris
estExt_fgenesh2_pm.C_60094
N
0.847
FOXG_07909
Fusarium oxysporum
FOXG_07909
N
0.842
FVEG_04832
Fusarium verticillioides
FVEG_04832
N
0.842
estExt_fgenesh5_pg.C_10453
Trichoderma reesei
estExt_fgenesh5_pg.C_10453
N
0.837
FGSG_05165
Fusarium graminearum
FGSG_05165
N
0.837
estExt_Genewise1Plus.C_sca_3_chr4_2_00461
Nectria haematococca
estExt_Genewise1Plus.C_sca_3_chr4_2_00461
N
0.837
estExt_Genewise1Plus.C_20716
Trichoderma virens
estExt_Genewise1Plus.C_20716
N
0.832
Pc16g14480
Penicillium chrysogenum
Pc16g14480
N
0.827
VDAG_07019
Verticillium dahliae
VDAG_07019
N
0.816
GLRG_08678
Colletotrichum graminicola
GLRG_08678
N
0.816
e_gw1.12.188.1
Trichoderma atroviride
e_gw1.12.188.1
N
0.816
estExt_Genewise1Plus.C_320091
Mycosphaerella fijiensis
estExt_Genewise1Plus.C_320091
N
0.792
estExt_fgenesh1_pm.C_20497
Cryphonectria parasitica
estExt_fgenesh1_pm.C_20497
N
0.786
MGG_12101
Magnaporthe oryzae
MGG_12101
N
0.735