estExt_Genewise1Plus.C_sca_3_chr4_2_00461 (Nectria haematococca)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_Genewise1Plus.C_sca_3_chr4_2_00461 T51540_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_Genewise1Plus.C_sca_3_chr4_2_00461 RRM 180 248
estExt_Genewise1Plus.C_sca_3_chr4_2_00461 RRM 279 348
estExt_Genewise1Plus.C_sca_3_chr4_2_00461 RRM 489 545

Links

Other RRM family RBPs
Other Nectria haematococca RBPs

45 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
FOXG_07909 Fusarium oxysporum FOXG_07909 N 0.990
FGSG_05165 Fusarium graminearum FGSG_05165 N 0.990
FVEG_04832 Fusarium verticillioides FVEG_04832 N 0.990
estExt_Genewise1Plus.C_20716 Trichoderma virens estExt_Genewise1Plus.C_20716 N 0.959
e_gw1.12.188.1 Trichoderma atroviride e_gw1.12.188.1 N 0.959
VDAG_07019 Verticillium dahliae VDAG_07019 N 0.954
estExt_fgenesh5_pg.C_10453 Trichoderma reesei estExt_fgenesh5_pg.C_10453 N 0.949
GLRG_08678 Colletotrichum graminicola GLRG_08678 N 0.934
Pad-1 Neurospora crassa NCU03491 N 0.918
estExt_Genewise1Plus.C_100357 Neurospora tetrasperma estExt_Genewise1Plus.C_100357 N 0.918
estExt_Genewise1Plus.C_160212 Neurospora discreta estExt_Genewise1Plus.C_160212 N 0.918
CHGG_08209 Chaetomium globosum CHGG_08209 N 0.898
estExt_fgenesh2_pm.C_60094 Thielavia terrestris estExt_fgenesh2_pm.C_60094 N 0.898
Pa_6_4410 Podospora anserina Pa_6_4410 N 0.893
estExt_fgenesh1_pg.C_70696 Myceliophthora thermophila estExt_fgenesh1_pg.C_70696 N 0.893
SS1G_00444 Sclerotinia sclerotiorum SS1G_00444 N 0.862
BC1G_00662 Botrytis cinerea BC1G_00662 N 0.862
ATEG_05213 Aspergillus terreus CADATEAG00005232 N 0.847
PMAA_065980 Penicillium marneffei PMAA_065980 N 0.847
UREG_02855 Uncinocarpus reesii UREG_02855 N 0.842
CIMG_03100 Coccidioides immitis CIMG_03100 N 0.842
ACLA_019550 Aspergillus clavatus CADACLAG00002508 N 0.842
HCAG_02257 Histoplasma capsulatum HCAG_02257 N 0.842
CPSG_04315 Coccidioides posadasii CPSG_04315 N 0.842
e_gw1.00042.124.1 Aspergillus carbonarius e_gw1.00042.124.1 N 0.842
NFIA_009510 Neosartorya fischeri CADNFIAG00001864 N 0.837
AFUA_1G15810 Aspergillus fumigatus CADAFUAG00006904 N 0.837
AO090005001118 Aspergillus oryzae CADAORAG00003032 N 0.837
An01g14180 Aspergillus niger CADANGAG00001415 N 0.837
TEQG_08002 Trichophyton equinum TEQG_08002 N 0.837
AFLA_083600 Aspergillus flavus CADAFLAG00001140 N 0.837
BDBG_07521 Blastomyces dermatitidis BDBG_07521 N 0.837
ARB_02131 Arthroderma benhamiae ARB_02131 N 0.837
PABG_06048 Paracoccidioides brasiliensis PABG_06048 N 0.837
MGYG_07158 Microsporum gypseum MGYG_07158 N 0.837
TESG_03203 Trichophyton tonsurans TESG_03203 N 0.837
TRV_02070 Trichophyton verrucosum TRV_02070 N 0.837
TERG_08096 Trichophyton rubrum TERG_08096 N 0.837
MCYG_00053 Microsporum canis MCYG_00053 N 0.832
estExt_fgenesh1_pm.C_20497 Cryphonectria parasitica estExt_fgenesh1_pm.C_20497 N 0.832
ANIA_00917 Aspergillus nidulans CADANIAG00001739 N 0.821
GSTUMT00004251001 Tuber melanosporum GSTUMT00004251001 N 0.811
Pc16g14480 Penicillium chrysogenum Pc16g14480 N 0.765
MGG_12101 Magnaporthe oryzae MGG_12101 N 0.750
estExt_Genewise1Plus.C_320091 Mycosphaerella fijiensis estExt_Genewise1Plus.C_320091 N 0.746