CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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DGIL_AUG5s12809g1t1
(
Acyrtosiphon pisum
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
DGIL_AUG5s12809g1t1
T31993_0.6
DroSpeGe (2008-Jul-18)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
DGIL_AUG5s12809g1t1
RRM
95
162
LCVSALHPKASDEQVKDTLYREYRKFGEFSVKISHELDERMAYVCFKSSEDAKDAKHSKPRIHLFDKI
DGIL_AUG5s12809g1t1
RRM
314
383
LFVGNLEFSISDEELHCLFGRYGVVEDIDIKRPLPGTGNAYAFVRYQNLDMAHRAKVELSGQYLGKFQCK
DGIL_AUG5s12809g1t1
RRM
395
459
IWVGGLGPWTSLAQLEQEFDRFGVIKKIEFVKSDICAYIQFECIDAATAAVNEMRGVSLGGPEHK
Links
Other
RRM
family RBPs
Other
Acyrtosiphon pisum
RBPs
11 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
DGIL_AUG5s14548g2t1
Acyrtosiphon pisum
DGIL_AUG5s14548g2t1
N
0.901
DGIL_AUG5s1025g3t1
Acyrtosiphon pisum
DGIL_AUG5s1025g3t1
N
0.901
BGIBMGA004109
Bombyx mori
BGIBMGA004109
N
0.760
AGAP005127
Anopheles gambiae
AGAP005127
N
0.730
PHUM308070
Pediculus humanus
PHUM308070
N
0.722
CPIJ002280
Culex quinquefasciatus
CPIJ002280
N
0.721
CpipJ_CPIJ002280
Culex pipiens
CpipJ_CPIJ002280
N
0.721
GK10751
Drosophila willistoni
FBgn0212763
N
0.709
nasonia_NCBI_hmm1324624
Nasonia vitripennis
nasonia_NCBI_hmm1324624
N
0.707
amel4_ncbi_hmm812
Apis mellifera
amel4_ncbi_hmm812
N
0.706
GF13651
Drosophila ananassae
FBgn0090679
N
0.704