CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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AGAP001883
(
Anopheles gambiae
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
AGAP001883
T32468_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
AGAP001883-PA
RRM
76
153
LIVNYLPQTMTEEEIRSLFSSVGEVESVKLVRDKNVIYPGQPKGQSLGYGFVNYHRPQDAEQAVNVLNGLRLQNKVLK
AGAP001883-PA
RRM
169
238
LYISGLPKTITQEELETIFRPYGEIITSRVLIQDGNDKPKGVGFIRFDQRKEAERAIQALNGTTPKGLTD
AGAP001883-PA
RRM
317
387
IFIYNLAPETEENTLWQLFGPFGAVQNVKVIKDAATNQCKGYGFVTMTNYEEAMLAIRSLNGYTLGQRVLQ
Links
Other
RRM
family RBPs
Other
Anopheles gambiae
RBPs
22 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAEL008164
Aedes aegypti
AAEL008164
N
0.973
CPIJ008385
Culex quinquefasciatus
CPIJ008385
N
0.968
CpipJ_CPIJ008385
Culex pipiens
CpipJ_CPIJ008385
N
0.968
GD16475
Drosophila simulans
FBgn0188089
N
0.773
GM19036
Drosophila sechellia
FBgn0173939
N
0.773
GG12756
Drosophila erecta
FBgn0105043
N
0.773
nasonia_NCBI_hmm330804
Nasonia vitripennis
nasonia_NCBI_hmm330804
I
0.745
amel4_ncbi_hmm5219
Apis mellifera
amel4_ncbi_hmm5219
I
0.732
CpipJ_CPIJ016143
Culex pipiens
CpipJ_CPIJ016143
I
0.723
CPIJ016143
Culex quinquefasciatus
CPIJ016143
I
0.723
AGAP000965
Anopheles gambiae
AGAP000965
I
0.718
GL26299
Drosophila persimilis
FBgn0163881
I
0.709
GH13638
Drosophila grimshawi
FBgn0121114
I
0.705
Rbp9
Drosophila melanogaster
FBgn0010263
D
0.705
GA28809-RA
Drosophila pseudoobscura
FBgn0250168
I
0.701
GK14865
Drosophila willistoni
FBgn0216870
I
0.701
GM18380
Drosophila sechellia
FBgn0173287
I
0.701
GI11879
Drosophila mojavensis
FBgn0134637
I
0.701
GF14992
Drosophila ananassae
FBgn0092017
I
0.701
GJ13991
Drosophila virilis
FBgn0201209
I
0.701
GG24901
Drosophila erecta
FBgn0117030
I
0.701
GE18193
Drosophila yakuba
FBgn0235624
I
0.701