CBN01626 (Caenorhabditis brenneri)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 CBN01626 T33969_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
sup-12
M170_0.6 		Caenorhabditis elegans WGUGUGD RNAcompete
Ray et al.(2013)
RNCMPT00179 		0.971
Rbm38
M049_0.6 		Mus musculus KKGUGUK RNAcompete
Ray et al.(2013)
RNCMPT00051 		0.841
RBM24
M175_0.6 		Homo sapiens WGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00184 		0.812
ENSTNIG00000009181
M240_0.6 		Tetraodon nigroviridis WGUGUG RNAcompete
Ray et al.(2013)
RNCMPT00285 		0.812
ENSDARG00000058818
M238_0.6 		Danio rerio KWGUGUG RNAcompete
Ray et al.(2013)
RNCMPT00283 		0.812
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
CBN01626 RRM 35 103

Links

Other RRM family RBPs
Other Caenorhabditis brenneri RBPs

88 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CBG14309 Caenorhabditis briggsae CBG14309 I 1.000
CRE00857 Caenorhabditis remanei CRE00857 I 1.000
sup-12 Caenorhabditis elegans T22B2.4 D 0.971
CJA06291 Caenorhabditis japonica CJA06291 I 0.957
LOAG_12553 Loa loa LOAG_12553 I 0.928
WUBG_00807 Wuchereria bancrofti WUBG_00807 I 0.913
RBM24 Takifugu rubripes ENSTRUG00000014826 I 0.855
RBM24 Oryzias latipes ENSORLG00000007916 I 0.855
RBM24 Tetraodon nigroviridis ENSTNIG00000018417 I 0.855
RBM24 Gasterosteus aculeatus ENSGACG00000008472 I 0.841
D3ZGE9_RAT Rattus norvegicus ENSRNOG00000006420 I 0.841
Rbm38 Mus musculus ENSMUSG00000027510 D 0.841
RBM38 Monodelphis domestica ENSMODG00000016458 I 0.826
RBM38 Macaca mulatta ENSMMUG00000031391 I 0.826
RBM24 Taeniopygia guttata ENSTGUG00000005984 I 0.826
RBM38 Pan troglodytes ENSPTRG00000013661 I 0.826
Rbm24 Rattus norvegicus ENSRNOG00000016925 I 0.826
RBM24 Ornithorhynchus anatinus ENSOANG00000011865 I 0.826
RBM38 Ornithorhynchus anatinus ENSOANG00000009259 I 0.826
Rbm24 Mus musculus ENSMUSG00000038132 I 0.826
rbm24 Xenopus tropicalis ENSXETG00000024618 I 0.826
RBM38 Cavia porcellus ENSCPOG00000012781 I 0.826
AAH44956 Xenopus laevis AAH44956 I 0.826
Q6GQD3 Xenopus laevis Q6GQD3 I 0.826
AAH72812 Xenopus laevis AAH72812 I 0.826
CAB96420 Xenopus laevis CAB96420 I 0.826
RBM38 Homo sapiens ENSG00000132819 I 0.826
Q9I8B3 Xenopus laevis Q9I8B3 I 0.826
RBM24 Gallus gallus ENSGALG00000012712 I 0.826
LOC100404144 Callithrix jacchus ENSCJAG00000019139 I 0.826
RBM38 Sus scrofa ENSSSCG00000007504 I 0.812
Q7T3I7 Xenopus laevis Q7T3I7 I 0.812
AAH72792 Xenopus laevis AAH72792 I 0.812
RBM24 Takifugu rubripes ENSTRUG00000010089 I 0.812
RBM24 Tursiops truncatus ENSTTRG00000000393 I 0.812
RBM24 Pteropus vampyrus ENSPVAG00000004954 I 0.812
ENSTNIG00000009181 Tetraodon nigroviridis ENSTNIG00000009181 D 0.812
rbm38 Xenopus tropicalis ENSXETG00000011268 I 0.812
gw1.9.44.1 Lottia gigantea gw1.9.44.1 I 0.812
AAP42281 Xenopus laevis AAP42281 I 0.812
RBM24 Sus scrofa ENSSSCG00000001066 I 0.812
ENSDARG00000058818 Danio rerio ENSDARG00000058818 D 0.812
RBM24 Gasterosteus aculeatus ENSGACG00000005383 I 0.812
RBM24 Loxodonta africana ENSLAFG00000000116 I 0.812
RBM24 Anolis carolinensis ENSACAG00000003962 I 0.812
rbm24a Danio rerio ENSDARG00000078293 I 0.812
RBM24 Homo sapiens ENSG00000112183 D 0.812
RBM38 Bos taurus ENSBTAG00000008105 I 0.812
RBM24 Pan troglodytes ENSPTRG00000017749 I 0.812
RBM24 Cavia porcellus ENSCPOG00000008838 I 0.812
RBM24 Gorilla gorilla ENSGGOG00000013628 I 0.812
RBM24 Monodelphis domestica ENSMODG00000010899 I 0.812
RBM24 Oryzias latipes ENSORLG00000012546 I 0.812
ENSPPYG00000016256 Pongo pygmaeus ENSPPYG00000016256 I 0.812
RBM24 Procavia capensis ENSPCAG00000015152 I 0.812
RBM24 Callithrix jacchus ENSCJAG00000006579 I 0.812
estExt_Genewise1.C_490050 Capitella teleta estExt_Genewise1.C_490050 I 0.797
AAF81070 Xenopus laevis AAF81070 I 0.797
RBM38 Tupaia belangeri ENSTBEG00000001689 I 0.797
RBM38 Erinaceus europaeus ENSEEUG00000013489 I 0.797
ENSDARG00000075681 Danio rerio ENSDARG00000075681 I 0.797
RBM38 Takifugu rubripes ENSTRUG00000010969 I 0.797
rbm24b Danio rerio ENSDARG00000031809 I 0.797
RBM38 Tetraodon nigroviridis ENSTNIG00000007093 I 0.797
RBM24 Myotis lucifugus ENSMLUG00000016451 I 0.797
RBM24 Microcebus murinus ENSMICG00000011880 I 0.797
Minc01542 Meloidogyne incognita Minc01542 I 0.783
RBM38 Oryzias latipes ENSORLG00000012154 I 0.783
Minc02018 Meloidogyne incognita Minc02018 I 0.783
Minc02019 Meloidogyne incognita Minc02019 I 0.783
ENSCSAVG00000001132 Ciona savignyi ENSCSAVG00000001132 I 0.768
nasonia_NCBI_hmm626184 Nasonia vitripennis nasonia_NCBI_hmm626184 I 0.768
AAEL003407 Aedes aegypti AAEL003407 I 0.768
RBM38 Gasterosteus aculeatus ENSGACG00000015224 I 0.768
BGIBMGA002685 Bombyx mori BGIBMGA002685 I 0.768
CpipJ_CPIJ008248 Culex pipiens CpipJ_CPIJ008248 I 0.768
RBM38 Takifugu rubripes ENSTRUG00000004291 I 0.768
amel4_ncbi_hmm7752 Apis mellifera amel4_ncbi_hmm7752 I 0.768
CPIJ008248 Culex quinquefasciatus CPIJ008248 I 0.768
72885 Helobdella robusta 72885 N 0.754
gw1.63.188.1 Daphnia pulex gw1.63.188.1 I 0.754
e_gw.63.59.1 Branchiostoma floridae e_gw.63.59.1 I 0.739
e_gw.482.10.1 Branchiostoma floridae e_gw.482.10.1 I 0.739
gw1.7.318.1 Trichoplax adhaerens gw1.7.318.1 I 0.739
gw1.13430.3.1 Daphnia pulex gw1.13430.3.1 I 0.725
Aqu1.216158 Amphimedon queenslandica Aqu1.216158 I 0.710
RBM38 Macropus eugenii ENSMEUG00000005475 N 0.710
SNAPOd2T00023369001 Oikopleura dioica SNAPOd2T00023369001 I 0.700