RBM38 (Takifugu rubripes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTRUG00000004291 T42224_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSDARG00000058818
M238_0.6 		Danio rerio KWGUGUG RNAcompete
Ray et al.(2013)
RNCMPT00283 		0.899
RBM24
M175_0.6 		Homo sapiens WGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00184 		0.884
Rbm38
M049_0.6 		Mus musculus KKGUGUK RNAcompete
Ray et al.(2013)
RNCMPT00051 		0.884
ENSTNIG00000009181
M240_0.6 		Tetraodon nigroviridis WGUGUG RNAcompete
Ray et al.(2013)
RNCMPT00285 		0.855
sup-12
M170_0.6 		Caenorhabditis elegans WGUGUGD RNAcompete
Ray et al.(2013)
RNCMPT00179 		0.797
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000010171 RRM 14 82

Links

Other RRM family RBPs
Other Takifugu rubripes RBPs

94 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
RBM38 Gasterosteus aculeatus ENSGACG00000015224 I 0.986
RBM38 Oryzias latipes ENSORLG00000012154 I 0.942
RBM38 Takifugu rubripes ENSTRUG00000010969 I 0.942
RBM38 Tetraodon nigroviridis ENSTNIG00000007093 I 0.942
rbm38 Xenopus tropicalis ENSXETG00000011268 I 0.913
RBM38 Macaca mulatta ENSMMUG00000031391 I 0.899
AAH72792 Xenopus laevis AAH72792 I 0.899
Rbm24 Mus musculus ENSMUSG00000038132 I 0.899
RBM38 Homo sapiens ENSG00000132819 I 0.899
AAP42281 Xenopus laevis AAP42281 I 0.899
ENSDARG00000058818 Danio rerio ENSDARG00000058818 D 0.899
RBM38 Cavia porcellus ENSCPOG00000012781 I 0.899
LOC100404144 Callithrix jacchus ENSCJAG00000019139 I 0.899
RBM38 Erinaceus europaeus ENSEEUG00000013489 I 0.899
Rbm24 Rattus norvegicus ENSRNOG00000016925 I 0.899
Q7T3I7 Xenopus laevis Q7T3I7 I 0.899
RBM24 Gallus gallus ENSGALG00000012712 I 0.884
RBM24 Homo sapiens ENSG00000112183 D 0.884
RBM24 Cavia porcellus ENSCPOG00000008838 I 0.884
RBM24 Gorilla gorilla ENSGGOG00000013628 I 0.884
Rbm38 Mus musculus ENSMUSG00000027510 D 0.884
D3ZGE9_RAT Rattus norvegicus ENSRNOG00000006420 I 0.884
RBM24 Pteropus vampyrus ENSPVAG00000004954 I 0.884
RBM24 Sus scrofa ENSSSCG00000001066 I 0.884
RBM38 Sus scrofa ENSSSCG00000007504 I 0.884
RBM24 Taeniopygia guttata ENSTGUG00000005984 I 0.884
RBM24 Pan troglodytes ENSPTRG00000017749 I 0.884
ENSPPYG00000016256 Pongo pygmaeus ENSPPYG00000016256 I 0.884
RBM38 Monodelphis domestica ENSMODG00000016458 I 0.884
RBM24 Myotis lucifugus ENSMLUG00000016451 I 0.884
RBM38 Bos taurus ENSBTAG00000008105 I 0.884
RBM24 Ornithorhynchus anatinus ENSOANG00000011865 I 0.884
RBM24 Procavia capensis ENSPCAG00000015152 I 0.884
RBM24 Loxodonta africana ENSLAFG00000000116 I 0.884
RBM24 Callithrix jacchus ENSCJAG00000006579 I 0.884
CAB96420 Xenopus laevis CAB96420 I 0.884
Q9I8B3 Xenopus laevis Q9I8B3 I 0.884
AAH72812 Xenopus laevis AAH72812 I 0.884
AAH44956 Xenopus laevis AAH44956 I 0.884
rbm24 Xenopus tropicalis ENSXETG00000024618 I 0.884
RBM24 Tursiops truncatus ENSTTRG00000000393 I 0.884
Q6GQD3 Xenopus laevis Q6GQD3 I 0.884
ENSDARG00000075681 Danio rerio ENSDARG00000075681 I 0.870
rbm24b Danio rerio ENSDARG00000031809 I 0.870
RBM38 Pan troglodytes ENSPTRG00000013661 I 0.870
RBM24 Gasterosteus aculeatus ENSGACG00000008472 I 0.870
RBM24 Microcebus murinus ENSMICG00000011880 I 0.870
RBM24 Monodelphis domestica ENSMODG00000010899 I 0.870
gw1.9.44.1 Lottia gigantea gw1.9.44.1 I 0.870
RBM38 Ornithorhynchus anatinus ENSOANG00000009259 I 0.870
RBM24 Anolis carolinensis ENSACAG00000003962 I 0.870
RBM24 Oryzias latipes ENSORLG00000007916 I 0.855
RBM24 Gasterosteus aculeatus ENSGACG00000005383 I 0.855
AAF81070 Xenopus laevis AAF81070 I 0.855
RBM24 Tetraodon nigroviridis ENSTNIG00000018417 I 0.855
RBM24 Takifugu rubripes ENSTRUG00000014826 I 0.855
ENSTNIG00000009181 Tetraodon nigroviridis ENSTNIG00000009181 D 0.855
RBM38 Tupaia belangeri ENSTBEG00000001689 I 0.855
RBM24 Takifugu rubripes ENSTRUG00000010089 I 0.855
RBM24 Oryzias latipes ENSORLG00000012546 I 0.855
rbm24a Danio rerio ENSDARG00000078293 I 0.855
gw1.63.188.1 Daphnia pulex gw1.63.188.1 I 0.826
ENSCSAVG00000001132 Ciona savignyi ENSCSAVG00000001132 I 0.812
LOAG_12553 Loa loa LOAG_12553 I 0.812
estExt_Genewise1.C_490050 Capitella teleta estExt_Genewise1.C_490050 I 0.812
WUBG_00807 Wuchereria bancrofti WUBG_00807 I 0.812
e_gw.482.10.1 Branchiostoma floridae e_gw.482.10.1 I 0.797
e_gw.63.59.1 Branchiostoma floridae e_gw.63.59.1 I 0.797
CJA06291 Caenorhabditis japonica CJA06291 I 0.797
sup-12 Caenorhabditis elegans T22B2.4 D 0.797
nasonia_NCBI_hmm626184 Nasonia vitripennis nasonia_NCBI_hmm626184 I 0.797
amel4_ncbi_hmm7752 Apis mellifera amel4_ncbi_hmm7752 I 0.797
RBM38 Gasterosteus aculeatus ENSGACG00000009873 N 0.789
BGIBMGA002685 Bombyx mori BGIBMGA002685 I 0.783
CBN01626 Caenorhabditis brenneri CBN01626 I 0.768
CRE00857 Caenorhabditis remanei CRE00857 I 0.768
RBM38 Macropus eugenii ENSMEUG00000005475 N 0.768
72885 Helobdella robusta 72885 N 0.768
CBG14309 Caenorhabditis briggsae CBG14309 I 0.768
gw1.7.318.1 Trichoplax adhaerens gw1.7.318.1 I 0.768
RBM38 Anolis carolinensis ENSACAG00000016238 N 0.746
AAEL003407 Aedes aegypti AAEL003407 I 0.739
CPIJ008248 Culex quinquefasciatus CPIJ008248 I 0.739
ENSCJAG00000021904 Callithrix jacchus ENSCJAG00000021904 N 0.739
Minc01542 Meloidogyne incognita Minc01542 I 0.739
Minc02018 Meloidogyne incognita Minc02018 I 0.739
Minc02019 Meloidogyne incognita Minc02019 I 0.739
CpipJ_CPIJ008248 Culex pipiens CpipJ_CPIJ008248 I 0.739
XP_001178734.1 Strongylocentrotus purpuratus XP_001178734.1 I 0.725
XP_789333.2 Strongylocentrotus purpuratus XP_789333.2 I 0.725
RBM24 Ochotona princeps ENSOPRG00000012150 I 0.718
gw1.13430.3.1 Daphnia pulex gw1.13430.3.1 I 0.710
Smp_075850 Schistosoma mansoni Smp_075850 I 0.710
SNAPOd2T00023369001 Oikopleura dioica SNAPOd2T00023369001 I 0.700