D3ZGE9_RAT (Rattus norvegicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSRNOG00000006420 T41048_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Rbm38
M049_0.6 		Mus musculus KKGUGUK RNAcompete
Ray et al.(2013)
RNCMPT00051 		1.000
RBM24
M175_0.6 		Homo sapiens WGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00184 		0.957
ENSTNIG00000009181
M240_0.6 		Tetraodon nigroviridis WGUGUG RNAcompete
Ray et al.(2013)
RNCMPT00285 		0.942
ENSDARG00000058818
M238_0.6 		Danio rerio KWGUGUG RNAcompete
Ray et al.(2013)
RNCMPT00283 		0.913
sup-12
M170_0.6 		Caenorhabditis elegans WGUGUGD RNAcompete
Ray et al.(2013)
RNCMPT00179 		0.841
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000008764 RRM 34 102

Links

Other RRM family RBPs
Other Rattus norvegicus RBPs

96 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Rbm38 Mus musculus ENSMUSG00000027510 D 1.000
RBM38 Cavia porcellus ENSCPOG00000012781 I 0.986
RBM38 Homo sapiens ENSG00000132819 I 0.986
LOC100404144 Callithrix jacchus ENSCJAG00000019139 I 0.986
RBM38 Macaca mulatta ENSMMUG00000031391 I 0.986
RBM38 Bos taurus ENSBTAG00000008105 I 0.971
Rbm24 Rattus norvegicus ENSRNOG00000016925 I 0.971
Rbm24 Mus musculus ENSMUSG00000038132 I 0.971
RBM38 Pan troglodytes ENSPTRG00000013661 I 0.971
RBM38 Sus scrofa ENSSSCG00000007504 I 0.971
RBM38 Monodelphis domestica ENSMODG00000016458 I 0.971
RBM24 Oryzias latipes ENSORLG00000007916 I 0.957
Q6GQD3 Xenopus laevis Q6GQD3 I 0.957
CAB96420 Xenopus laevis CAB96420 I 0.957
AAH72812 Xenopus laevis AAH72812 I 0.957
AAH44956 Xenopus laevis AAH44956 I 0.957
RBM24 Cavia porcellus ENSCPOG00000008838 I 0.957
RBM24 Gorilla gorilla ENSGGOG00000013628 I 0.957
RBM24 Loxodonta africana ENSLAFG00000000116 I 0.957
RBM24 Gallus gallus ENSGALG00000012712 I 0.957
RBM24 Homo sapiens ENSG00000112183 D 0.957
RBM24 Callithrix jacchus ENSCJAG00000006579 I 0.957
RBM24 Procavia capensis ENSPCAG00000015152 I 0.957
RBM24 Ornithorhynchus anatinus ENSOANG00000011865 I 0.957
Q9I8B3 Xenopus laevis Q9I8B3 I 0.957
RBM24 Tetraodon nigroviridis ENSTNIG00000018417 I 0.957
RBM24 Tursiops truncatus ENSTTRG00000000393 I 0.957
rbm24 Xenopus tropicalis ENSXETG00000024618 I 0.957
RBM24 Pteropus vampyrus ENSPVAG00000004954 I 0.957
RBM24 Takifugu rubripes ENSTRUG00000014826 I 0.957
RBM24 Taeniopygia guttata ENSTGUG00000005984 I 0.957
ENSPPYG00000016256 Pongo pygmaeus ENSPPYG00000016256 I 0.957
RBM24 Sus scrofa ENSSSCG00000001066 I 0.957
RBM24 Pan troglodytes ENSPTRG00000017749 I 0.957
RBM38 Ornithorhynchus anatinus ENSOANG00000009259 I 0.942
rbm38 Xenopus tropicalis ENSXETG00000011268 I 0.942
rbm24a Danio rerio ENSDARG00000078293 I 0.942
RBM24 Gasterosteus aculeatus ENSGACG00000005383 I 0.942
RBM38 Tupaia belangeri ENSTBEG00000001689 I 0.942
RBM24 Monodelphis domestica ENSMODG00000010899 I 0.942
RBM24 Myotis lucifugus ENSMLUG00000016451 I 0.942
ENSTNIG00000009181 Tetraodon nigroviridis ENSTNIG00000009181 D 0.942
RBM24 Takifugu rubripes ENSTRUG00000010089 I 0.942
RBM38 Erinaceus europaeus ENSEEUG00000013489 I 0.942
RBM24 Anolis carolinensis ENSACAG00000003962 I 0.942
RBM24 Oryzias latipes ENSORLG00000012546 I 0.942
AAP42281 Xenopus laevis AAP42281 I 0.928
ENSDARG00000075681 Danio rerio ENSDARG00000075681 I 0.928
AAH72792 Xenopus laevis AAH72792 I 0.928
AAF81070 Xenopus laevis AAF81070 I 0.928
RBM24 Microcebus murinus ENSMICG00000011880 I 0.928
Q7T3I7 Xenopus laevis Q7T3I7 I 0.928
RBM24 Gasterosteus aculeatus ENSGACG00000008472 I 0.928
rbm24b Danio rerio ENSDARG00000031809 I 0.928
RBM38 Takifugu rubripes ENSTRUG00000010969 I 0.913
RBM38 Tetraodon nigroviridis ENSTNIG00000007093 I 0.913
gw1.9.44.1 Lottia gigantea gw1.9.44.1 I 0.913
ENSDARG00000058818 Danio rerio ENSDARG00000058818 D 0.913
RBM38 Takifugu rubripes ENSTRUG00000004291 I 0.884
RBM38 Oryzias latipes ENSORLG00000012154 I 0.884
RBM38 Gasterosteus aculeatus ENSGACG00000015224 I 0.884
e_gw.63.59.1 Branchiostoma floridae e_gw.63.59.1 I 0.855
e_gw.482.10.1 Branchiostoma floridae e_gw.482.10.1 I 0.855
RBM38 Macropus eugenii ENSMEUG00000005475 N 0.855
LOAG_12553 Loa loa LOAG_12553 I 0.855
ENSCSAVG00000001132 Ciona savignyi ENSCSAVG00000001132 I 0.855
estExt_Genewise1.C_490050 Capitella teleta estExt_Genewise1.C_490050 I 0.855
CBN01626 Caenorhabditis brenneri CBN01626 I 0.841
gw1.63.188.1 Daphnia pulex gw1.63.188.1 I 0.841
CBG14309 Caenorhabditis briggsae CBG14309 I 0.841
WUBG_00807 Wuchereria bancrofti WUBG_00807 I 0.841
nasonia_NCBI_hmm626184 Nasonia vitripennis nasonia_NCBI_hmm626184 I 0.841
CRE00857 Caenorhabditis remanei CRE00857 I 0.841
amel4_ncbi_hmm7752 Apis mellifera amel4_ncbi_hmm7752 I 0.841
sup-12 Caenorhabditis elegans T22B2.4 D 0.841
BGIBMGA002685 Bombyx mori BGIBMGA002685 I 0.826
CJA06291 Caenorhabditis japonica CJA06291 I 0.826
72885 Helobdella robusta 72885 N 0.826
Minc01542 Meloidogyne incognita Minc01542 I 0.797
Minc02018 Meloidogyne incognita Minc02018 I 0.797
Minc02019 Meloidogyne incognita Minc02019 I 0.797
ENSCJAG00000021904 Callithrix jacchus ENSCJAG00000021904 N 0.797
RBM38 Anolis carolinensis ENSACAG00000016238 N 0.789
AAEL003407 Aedes aegypti AAEL003407 I 0.783
CPIJ008248 Culex quinquefasciatus CPIJ008248 I 0.783
CpipJ_CPIJ008248 Culex pipiens CpipJ_CPIJ008248 I 0.783
gw1.7.318.1 Trichoplax adhaerens gw1.7.318.1 I 0.783
RBM38 Gasterosteus aculeatus ENSGACG00000009873 N 0.775
RBM24 Ochotona princeps ENSOPRG00000012150 I 0.775
SNAPOd2T00023369001 Oikopleura dioica SNAPOd2T00023369001 I 0.771
gw1.13430.3.1 Daphnia pulex gw1.13430.3.1 I 0.768
XP_789333.2 Strongylocentrotus purpuratus XP_789333.2 I 0.739
Smp_075850 Schistosoma mansoni Smp_075850 I 0.739
XP_001178734.1 Strongylocentrotus purpuratus XP_001178734.1 I 0.739
RBM24 Canis familiaris ENSCAFG00000009942 N 0.718
RBM24 Tarsius syrichta ENSTSYG00000001242 N 0.710