RBM38 (Tetraodon nigroviridis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTNIG00000007093 T42046_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSDARG00000058818
M238_0.6 		Danio rerio KWGUGUG RNAcompete
Ray et al.(2013)
RNCMPT00283 		0.928
RBM24
M175_0.6 		Homo sapiens WGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00184 		0.913
Rbm38
M049_0.6 		Mus musculus KKGUGUK RNAcompete
Ray et al.(2013)
RNCMPT00051 		0.913
ENSTNIG00000009181
M240_0.6 		Tetraodon nigroviridis WGUGUG RNAcompete
Ray et al.(2013)
RNCMPT00285 		0.884
sup-12
M170_0.6 		Caenorhabditis elegans WGUGUGD RNAcompete
Ray et al.(2013)
RNCMPT00179 		0.826
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000009894 RRM 15 83

Links

Other RRM family RBPs
Other Tetraodon nigroviridis RBPs

94 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
RBM38 Takifugu rubripes ENSTRUG00000010969 I 1.000
rbm38 Xenopus tropicalis ENSXETG00000011268 I 0.942
RBM38 Gasterosteus aculeatus ENSGACG00000015224 I 0.942
RBM38 Takifugu rubripes ENSTRUG00000004291 I 0.942
Q7T3I7 Xenopus laevis Q7T3I7 I 0.928
Rbm24 Mus musculus ENSMUSG00000038132 I 0.928
AAP42281 Xenopus laevis AAP42281 I 0.928
AAH72792 Xenopus laevis AAH72792 I 0.928
RBM38 Macaca mulatta ENSMMUG00000031391 I 0.928
RBM38 Homo sapiens ENSG00000132819 I 0.928
RBM38 Cavia porcellus ENSCPOG00000012781 I 0.928
LOC100404144 Callithrix jacchus ENSCJAG00000019139 I 0.928
Rbm24 Rattus norvegicus ENSRNOG00000016925 I 0.928
ENSDARG00000058818 Danio rerio ENSDARG00000058818 D 0.928
AAH72812 Xenopus laevis AAH72812 I 0.913
RBM24 Cavia porcellus ENSCPOG00000008838 I 0.913
RBM24 Homo sapiens ENSG00000112183 D 0.913
RBM38 Bos taurus ENSBTAG00000008105 I 0.913
AAH44956 Xenopus laevis AAH44956 I 0.913
CAB96420 Xenopus laevis CAB96420 I 0.913
RBM24 Loxodonta africana ENSLAFG00000000116 I 0.913
RBM24 Gorilla gorilla ENSGGOG00000013628 I 0.913
Q9I8B3 Xenopus laevis Q9I8B3 I 0.913
RBM38 Erinaceus europaeus ENSEEUG00000013489 I 0.913
Q6GQD3 Xenopus laevis Q6GQD3 I 0.913
RBM24 Gallus gallus ENSGALG00000012712 I 0.913
RBM24 Myotis lucifugus ENSMLUG00000016451 I 0.913
ENSPPYG00000016256 Pongo pygmaeus ENSPPYG00000016256 I 0.913
RBM24 Procavia capensis ENSPCAG00000015152 I 0.913
RBM24 Tursiops truncatus ENSTTRG00000000393 I 0.913
RBM24 Pan troglodytes ENSPTRG00000017749 I 0.913
D3ZGE9_RAT Rattus norvegicus ENSRNOG00000006420 I 0.913
RBM24 Pteropus vampyrus ENSPVAG00000004954 I 0.913
rbm24 Xenopus tropicalis ENSXETG00000024618 I 0.913
RBM24 Sus scrofa ENSSSCG00000001066 I 0.913
RBM38 Monodelphis domestica ENSMODG00000016458 I 0.913
RBM24 Taeniopygia guttata ENSTGUG00000005984 I 0.913
RBM24 Ornithorhynchus anatinus ENSOANG00000011865 I 0.913
Rbm38 Mus musculus ENSMUSG00000027510 D 0.913
RBM38 Sus scrofa ENSSSCG00000007504 I 0.913
RBM24 Callithrix jacchus ENSCJAG00000006579 I 0.913
rbm24b Danio rerio ENSDARG00000031809 I 0.899
RBM38 Pan troglodytes ENSPTRG00000013661 I 0.899
RBM38 Ornithorhynchus anatinus ENSOANG00000009259 I 0.899
RBM24 Monodelphis domestica ENSMODG00000010899 I 0.899
RBM38 Oryzias latipes ENSORLG00000012154 I 0.899
RBM24 Microcebus murinus ENSMICG00000011880 I 0.899
RBM24 Gasterosteus aculeatus ENSGACG00000008472 I 0.899
ENSDARG00000075681 Danio rerio ENSDARG00000075681 I 0.899
RBM24 Anolis carolinensis ENSACAG00000003962 I 0.899
gw1.9.44.1 Lottia gigantea gw1.9.44.1 I 0.899
RBM38 Tupaia belangeri ENSTBEG00000001689 I 0.884
AAF81070 Xenopus laevis AAF81070 I 0.884
RBM24 Oryzias latipes ENSORLG00000007916 I 0.884
RBM24 Oryzias latipes ENSORLG00000012546 I 0.884
RBM24 Takifugu rubripes ENSTRUG00000010089 I 0.884
RBM24 Takifugu rubripes ENSTRUG00000014826 I 0.884
RBM24 Gasterosteus aculeatus ENSGACG00000005383 I 0.884
RBM24 Tetraodon nigroviridis ENSTNIG00000018417 I 0.884
ENSTNIG00000009181 Tetraodon nigroviridis ENSTNIG00000009181 D 0.884
rbm24a Danio rerio ENSDARG00000078293 I 0.884
estExt_Genewise1.C_490050 Capitella teleta estExt_Genewise1.C_490050 I 0.855
ENSCSAVG00000001132 Ciona savignyi ENSCSAVG00000001132 I 0.841
WUBG_00807 Wuchereria bancrofti WUBG_00807 I 0.841
LOAG_12553 Loa loa LOAG_12553 I 0.841
e_gw.482.10.1 Branchiostoma floridae e_gw.482.10.1 I 0.826
e_gw.63.59.1 Branchiostoma floridae e_gw.63.59.1 I 0.826
nasonia_NCBI_hmm626184 Nasonia vitripennis nasonia_NCBI_hmm626184 I 0.826
CJA06291 Caenorhabditis japonica CJA06291 I 0.826
gw1.63.188.1 Daphnia pulex gw1.63.188.1 I 0.826
sup-12 Caenorhabditis elegans T22B2.4 D 0.826
amel4_ncbi_hmm7752 Apis mellifera amel4_ncbi_hmm7752 I 0.826
RBM38 Gasterosteus aculeatus ENSGACG00000009873 N 0.817
BGIBMGA002685 Bombyx mori BGIBMGA002685 I 0.812
CRE00857 Caenorhabditis remanei CRE00857 I 0.797
CBN01626 Caenorhabditis brenneri CBN01626 I 0.797
RBM38 Macropus eugenii ENSMEUG00000005475 N 0.797
72885 Helobdella robusta 72885 N 0.797
CBG14309 Caenorhabditis briggsae CBG14309 I 0.797
Minc01542 Meloidogyne incognita Minc01542 I 0.768
CpipJ_CPIJ008248 Culex pipiens CpipJ_CPIJ008248 I 0.768
AAEL003407 Aedes aegypti AAEL003407 I 0.768
Minc02018 Meloidogyne incognita Minc02018 I 0.768
Minc02019 Meloidogyne incognita Minc02019 I 0.768
gw1.7.318.1 Trichoplax adhaerens gw1.7.318.1 I 0.768
CPIJ008248 Culex quinquefasciatus CPIJ008248 I 0.768
RBM38 Anolis carolinensis ENSACAG00000016238 N 0.761
ENSCJAG00000021904 Callithrix jacchus ENSCJAG00000021904 N 0.754
Smp_075850 Schistosoma mansoni Smp_075850 I 0.754
RBM24 Ochotona princeps ENSOPRG00000012150 I 0.746
gw1.13430.3.1 Daphnia pulex gw1.13430.3.1 I 0.739
SNAPOd2T00023369001 Oikopleura dioica SNAPOd2T00023369001 I 0.729
XP_001178734.1 Strongylocentrotus purpuratus XP_001178734.1 I 0.725
XP_789333.2 Strongylocentrotus purpuratus XP_789333.2 I 0.725