CpipJ_CPIJ008248 (Culex pipiens)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 CpipJ_CPIJ008248 T28933_0.6 Broad (2011-Oct-27)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBM24
M175_0.6 		Homo sapiens WGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00184 		0.797
sup-12
M170_0.6 		Caenorhabditis elegans WGUGUGD RNAcompete
Ray et al.(2013)
RNCMPT00179 		0.797
ENSTNIG00000009181
M240_0.6 		Tetraodon nigroviridis WGUGUG RNAcompete
Ray et al.(2013)
RNCMPT00285 		0.783
Rbm38
M049_0.6 		Mus musculus KKGUGUK RNAcompete
Ray et al.(2013)
RNCMPT00051 		0.783
ENSDARG00000058818
M238_0.6 		Danio rerio KWGUGUG RNAcompete
Ray et al.(2013)
RNCMPT00283 		0.768
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
CpipJ_CPIJ008248-RA RRM 37 105

Links

Other RRM family RBPs
Other Culex pipiens RBPs

87 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CPIJ008248 Culex quinquefasciatus CPIJ008248 I 1.000
AAEL003407 Aedes aegypti AAEL003407 I 1.000
BGIBMGA002685 Bombyx mori BGIBMGA002685 I 0.928
nasonia_NCBI_hmm626184 Nasonia vitripennis nasonia_NCBI_hmm626184 I 0.913
amel4_ncbi_hmm7752 Apis mellifera amel4_ncbi_hmm7752 I 0.913
RBM24 Gasterosteus aculeatus ENSGACG00000008472 I 0.826
gw1.63.188.1 Daphnia pulex gw1.63.188.1 I 0.826
estExt_Genewise1.C_490050 Capitella teleta estExt_Genewise1.C_490050 I 0.826
RBM24 Takifugu rubripes ENSTRUG00000014826 I 0.812
CAB96420 Xenopus laevis CAB96420 I 0.812
rbm24 Xenopus tropicalis ENSXETG00000024618 I 0.812
RBM24 Tetraodon nigroviridis ENSTNIG00000018417 I 0.812
RBM24 Taeniopygia guttata ENSTGUG00000005984 I 0.812
Rbm24 Rattus norvegicus ENSRNOG00000016925 I 0.812
Q9I8B3 Xenopus laevis Q9I8B3 I 0.812
RBM24 Gallus gallus ENSGALG00000012712 I 0.812
Rbm24 Mus musculus ENSMUSG00000038132 I 0.812
AAH44956 Xenopus laevis AAH44956 I 0.812
RBM24 Ornithorhynchus anatinus ENSOANG00000011865 I 0.812
AAH72812 Xenopus laevis AAH72812 I 0.812
RBM38 Ornithorhynchus anatinus ENSOANG00000009259 I 0.812
RBM24 Oryzias latipes ENSORLG00000007916 I 0.812
Q6GQD3 Xenopus laevis Q6GQD3 I 0.812
gw1.9.44.1 Lottia gigantea gw1.9.44.1 I 0.812
RBM24 Pan troglodytes ENSPTRG00000017749 I 0.797
RBM24 Pteropus vampyrus ENSPVAG00000004954 I 0.797
RBM24 Procavia capensis ENSPCAG00000015152 I 0.797
RBM24 Tursiops truncatus ENSTTRG00000000393 I 0.797
AAH72792 Xenopus laevis AAH72792 I 0.797
AAP42281 Xenopus laevis AAP42281 I 0.797
AAF81070 Xenopus laevis AAF81070 I 0.797
Q7T3I7 Xenopus laevis Q7T3I7 I 0.797
rbm38 Xenopus tropicalis ENSXETG00000011268 I 0.797
sup-12 Caenorhabditis elegans T22B2.4 D 0.797
RBM24 Sus scrofa ENSSSCG00000001066 I 0.797
ENSPPYG00000016256 Pongo pygmaeus ENSPPYG00000016256 I 0.797
RBM38 Cavia porcellus ENSCPOG00000012781 I 0.797
RBM24 Gorilla gorilla ENSGGOG00000013628 I 0.797
RBM24 Cavia porcellus ENSCPOG00000008838 I 0.797
rbm24b Danio rerio ENSDARG00000031809 I 0.797
ENSDARG00000075681 Danio rerio ENSDARG00000075681 I 0.797
RBM38 Homo sapiens ENSG00000132819 I 0.797
RBM24 Homo sapiens ENSG00000112183 D 0.797
RBM24 Loxodonta africana ENSLAFG00000000116 I 0.797
LOC100404144 Callithrix jacchus ENSCJAG00000019139 I 0.797
RBM38 Macaca mulatta ENSMMUG00000031391 I 0.797
RBM24 Monodelphis domestica ENSMODG00000010899 I 0.797
RBM38 Monodelphis domestica ENSMODG00000016458 I 0.797
RBM24 Anolis carolinensis ENSACAG00000003962 I 0.797
CJA06291 Caenorhabditis japonica CJA06291 I 0.797
RBM24 Callithrix jacchus ENSCJAG00000006579 I 0.797
RBM24 Myotis lucifugus ENSMLUG00000016451 I 0.797
RBM38 Bos taurus ENSBTAG00000008105 I 0.783
Rbm38 Mus musculus ENSMUSG00000027510 D 0.783
RBM24 Takifugu rubripes ENSTRUG00000010089 I 0.783
RBM38 Erinaceus europaeus ENSEEUG00000013489 I 0.783
rbm24a Danio rerio ENSDARG00000078293 I 0.783
RBM38 Sus scrofa ENSSSCG00000007504 I 0.783
D3ZGE9_RAT Rattus norvegicus ENSRNOG00000006420 I 0.783
RBM24 Gasterosteus aculeatus ENSGACG00000005383 I 0.783
ENSTNIG00000009181 Tetraodon nigroviridis ENSTNIG00000009181 D 0.783
RBM24 Oryzias latipes ENSORLG00000012546 I 0.783
CBG14309 Caenorhabditis briggsae CBG14309 I 0.768
CRE00857 Caenorhabditis remanei CRE00857 I 0.768
RBM24 Microcebus murinus ENSMICG00000011880 I 0.768
CBN01626 Caenorhabditis brenneri CBN01626 I 0.768
WUBG_00807 Wuchereria bancrofti WUBG_00807 I 0.768
RBM38 Tetraodon nigroviridis ENSTNIG00000007093 I 0.768
RBM38 Takifugu rubripes ENSTRUG00000010969 I 0.768
XP_789333.2 Strongylocentrotus purpuratus XP_789333.2 I 0.768
ENSDARG00000058818 Danio rerio ENSDARG00000058818 D 0.768
LOAG_12553 Loa loa LOAG_12553 I 0.768
XP_001178734.1 Strongylocentrotus purpuratus XP_001178734.1 I 0.768
RBM38 Pan troglodytes ENSPTRG00000013661 I 0.754
e_gw.63.59.1 Branchiostoma floridae e_gw.63.59.1 I 0.754
e_gw.482.10.1 Branchiostoma floridae e_gw.482.10.1 I 0.754
RBM38 Tupaia belangeri ENSTBEG00000001689 I 0.754
SNAPOd2T00023369001 Oikopleura dioica SNAPOd2T00023369001 I 0.743
RBM38 Gasterosteus aculeatus ENSGACG00000015224 I 0.739
72885 Helobdella robusta 72885 N 0.739
ENSCSAVG00000001132 Ciona savignyi ENSCSAVG00000001132 I 0.739
RBM38 Takifugu rubripes ENSTRUG00000004291 I 0.739
Minc01542 Meloidogyne incognita Minc01542 I 0.725
Minc02019 Meloidogyne incognita Minc02019 I 0.725
RBM38 Oryzias latipes ENSORLG00000012154 I 0.725
Minc02018 Meloidogyne incognita Minc02018 I 0.725
gw1.7.318.1 Trichoplax adhaerens gw1.7.318.1 I 0.710