ENSCSAVG00000001132 (Ciona savignyi)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCSAVG00000001132 T35945_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSDARG00000058818
M238_0.6 		Danio rerio KWGUGUG RNAcompete
Ray et al.(2013)
RNCMPT00283 		0.899
RBM24
M175_0.6 		Homo sapiens WGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00184 		0.855
Rbm38
M049_0.6 		Mus musculus KKGUGUK RNAcompete
Ray et al.(2013)
RNCMPT00051 		0.855
ENSTNIG00000009181
M240_0.6 		Tetraodon nigroviridis WGUGUG RNAcompete
Ray et al.(2013)
RNCMPT00285 		0.841
sup-12
M170_0.6 		Caenorhabditis elegans WGUGUGD RNAcompete
Ray et al.(2013)
RNCMPT00179 		0.768
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCSAVP00000001938 RRM 13 80

Links

Other RRM family RBPs
Other Ciona savignyi RBPs

94 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSDARG00000058818 Danio rerio ENSDARG00000058818 D 0.899
gw1.9.44.1 Lottia gigantea gw1.9.44.1 I 0.884
RBM38 Sus scrofa ENSSSCG00000007504 I 0.870
Rbm24 Mus musculus ENSMUSG00000038132 I 0.870
Rbm24 Rattus norvegicus ENSRNOG00000016925 I 0.870
RBM38 Bos taurus ENSBTAG00000008105 I 0.870
RBM38 Cavia porcellus ENSCPOG00000012781 I 0.870
LOC100404144 Callithrix jacchus ENSCJAG00000019139 I 0.870
RBM38 Macaca mulatta ENSMMUG00000031391 I 0.870
rbm38 Xenopus tropicalis ENSXETG00000011268 I 0.870
RBM38 Erinaceus europaeus ENSEEUG00000013489 I 0.870
RBM38 Homo sapiens ENSG00000132819 I 0.870
rbm24 Xenopus tropicalis ENSXETG00000024618 I 0.855
RBM24 Pteropus vampyrus ENSPVAG00000004954 I 0.855
RBM24 Homo sapiens ENSG00000112183 D 0.855
RBM24 Tursiops truncatus ENSTTRG00000000393 I 0.855
RBM24 Taeniopygia guttata ENSTGUG00000005984 I 0.855
RBM24 Sus scrofa ENSSSCG00000001066 I 0.855
ENSDARG00000075681 Danio rerio ENSDARG00000075681 I 0.855
D3ZGE9_RAT Rattus norvegicus ENSRNOG00000006420 I 0.855
RBM24 Cavia porcellus ENSCPOG00000008838 I 0.855
Q6GQD3 Xenopus laevis Q6GQD3 I 0.855
Q7T3I7 Xenopus laevis Q7T3I7 I 0.855
Q9I8B3 Xenopus laevis Q9I8B3 I 0.855
CAB96420 Xenopus laevis CAB96420 I 0.855
AAP42281 Xenopus laevis AAP42281 I 0.855
AAH44956 Xenopus laevis AAH44956 I 0.855
AAH72792 Xenopus laevis AAH72792 I 0.855
AAH72812 Xenopus laevis AAH72812 I 0.855
RBM24 Pan troglodytes ENSPTRG00000017749 I 0.855
rbm24b Danio rerio ENSDARG00000031809 I 0.855
RBM24 Callithrix jacchus ENSCJAG00000006579 I 0.855
RBM38 Ornithorhynchus anatinus ENSOANG00000009259 I 0.855
RBM24 Ornithorhynchus anatinus ENSOANG00000011865 I 0.855
RBM24 Myotis lucifugus ENSMLUG00000016451 I 0.855
RBM24 Loxodonta africana ENSLAFG00000000116 I 0.855
RBM24 Gorilla gorilla ENSGGOG00000013628 I 0.855
RBM24 Gallus gallus ENSGALG00000012712 I 0.855
RBM24 Procavia capensis ENSPCAG00000015152 I 0.855
Rbm38 Mus musculus ENSMUSG00000027510 D 0.855
RBM38 Monodelphis domestica ENSMODG00000016458 I 0.855
ENSPPYG00000016256 Pongo pygmaeus ENSPPYG00000016256 I 0.855
RBM24 Gasterosteus aculeatus ENSGACG00000005383 I 0.841
rbm24a Danio rerio ENSDARG00000078293 I 0.841
RBM24 Anolis carolinensis ENSACAG00000003962 I 0.841
RBM24 Oryzias latipes ENSORLG00000012546 I 0.841
ENSTNIG00000009181 Tetraodon nigroviridis ENSTNIG00000009181 D 0.841
RBM38 Tetraodon nigroviridis ENSTNIG00000007093 I 0.841
RBM24 Takifugu rubripes ENSTRUG00000010089 I 0.841
RBM38 Takifugu rubripes ENSTRUG00000010969 I 0.841
RBM24 Monodelphis domestica ENSMODG00000010899 I 0.841
RBM38 Pan troglodytes ENSPTRG00000013661 I 0.826
RBM24 Gasterosteus aculeatus ENSGACG00000008472 I 0.826
RBM24 Microcebus murinus ENSMICG00000011880 I 0.826
RBM24 Takifugu rubripes ENSTRUG00000014826 I 0.826
RBM24 Tetraodon nigroviridis ENSTNIG00000018417 I 0.826
RBM38 Tupaia belangeri ENSTBEG00000001689 I 0.826
RBM24 Oryzias latipes ENSORLG00000007916 I 0.826
AAF81070 Xenopus laevis AAF81070 I 0.826
e_gw.63.59.1 Branchiostoma floridae e_gw.63.59.1 I 0.826
e_gw.482.10.1 Branchiostoma floridae e_gw.482.10.1 I 0.826
RBM38 Gasterosteus aculeatus ENSGACG00000015224 I 0.826
RBM38 Oryzias latipes ENSORLG00000012154 I 0.812
RBM38 Takifugu rubripes ENSTRUG00000004291 I 0.812
estExt_Genewise1.C_490050 Capitella teleta estExt_Genewise1.C_490050 I 0.812
gw1.63.188.1 Daphnia pulex gw1.63.188.1 I 0.812
amel4_ncbi_hmm7752 Apis mellifera amel4_ncbi_hmm7752 I 0.797
nasonia_NCBI_hmm626184 Nasonia vitripennis nasonia_NCBI_hmm626184 I 0.797
BGIBMGA002685 Bombyx mori BGIBMGA002685 I 0.797
WUBG_00807 Wuchereria bancrofti WUBG_00807 I 0.783
LOAG_12553 Loa loa LOAG_12553 I 0.783
gw1.7.318.1 Trichoplax adhaerens gw1.7.318.1 I 0.783
Minc02018 Meloidogyne incognita Minc02018 I 0.783
Minc02019 Meloidogyne incognita Minc02019 I 0.783
Minc01542 Meloidogyne incognita Minc01542 I 0.783
CBG14309 Caenorhabditis briggsae CBG14309 I 0.768
CBN01626 Caenorhabditis brenneri CBN01626 I 0.768
CJA06291 Caenorhabditis japonica CJA06291 I 0.768
CRE00857 Caenorhabditis remanei CRE00857 I 0.768
sup-12 Caenorhabditis elegans T22B2.4 D 0.768
RBM38 Macropus eugenii ENSMEUG00000005475 N 0.765
72885 Helobdella robusta 72885 N 0.754
ENSCJAG00000021904 Callithrix jacchus ENSCJAG00000021904 N 0.754
Smp_075850 Schistosoma mansoni Smp_075850 I 0.750
SNAPOd2T00023369001 Oikopleura dioica SNAPOd2T00023369001 I 0.743
gw1.13430.3.1 Daphnia pulex gw1.13430.3.1 I 0.739
CPIJ008248 Culex quinquefasciatus CPIJ008248 I 0.739
CpipJ_CPIJ008248 Culex pipiens CpipJ_CPIJ008248 I 0.739
AAEL003407 Aedes aegypti AAEL003407 I 0.739
RBM38 Gasterosteus aculeatus ENSGACG00000009873 N 0.732
Aqu1.216158 Amphimedon queenslandica Aqu1.216158 I 0.725
XP_001178734.1 Strongylocentrotus purpuratus XP_001178734.1 I 0.725
XP_789333.2 Strongylocentrotus purpuratus XP_789333.2 I 0.725
RBM38 Anolis carolinensis ENSACAG00000016238 N 0.718