ENSBTAG00000026365 (Bos taurus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSBTAG00000026365 T34930_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
sf3b4
M195_0.6 		Danio rerio CAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00224 		0.800
Smp_067420
M201_0.6 		Schistosoma mansoni DWWUUUU RNAcompete
Ray et al.(2013)
RNCMPT00232 		0.715
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSBTAP00000013961 RRM 15 86
ENSBTAP00000013961 RRM 103 173
ENSBTAP00000037282 RRM 15 86
ENSBTAP00000037282 RRM 103 173

Links

Other RRM family RBPs
Other Bos taurus RBPs

64 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSPVAG00000014171 Pteropus vampyrus ENSPVAG00000014171 I 0.812
Sf3b4 Rattus norvegicus ENSRNOG00000021181 I 0.812
ENSSSCG00000006665 Sus scrofa ENSSSCG00000006665 I 0.812
SF3B4 Pan troglodytes ENSPTRG00000001243 I 0.812
SF3B4 Oryzias latipes ENSORLG00000003062 I 0.812
ENSOCUG00000004614 Oryctolagus cuniculus ENSOCUG00000004614 I 0.812
SF3B4 Otolemur garnettii ENSOGAG00000006265 I 0.812
ENSOPRG00000010808 Ochotona princeps ENSOPRG00000010808 I 0.812
SF3B4 Taeniopygia guttata ENSTGUG00000004470 I 0.812
Sf3b4 Mus musculus ENSMUSG00000068856 I 0.812
sf3b4 Xenopus tropicalis ENSXETG00000011038 I 0.812
Ame_R019118 Ailuropoda melanoleuca Ame_R019118 I 0.812
ENSACAG00000010019 Anolis carolinensis ENSACAG00000010019 I 0.812
ENSVPAG00000008152 Vicugna pacos ENSVPAG00000008152 I 0.812
ENSTTRG00000005217 Tursiops truncatus ENSTTRG00000005217 I 0.812
SF3B4 Takifugu rubripes ENSTRUG00000004516 I 0.812
SF3B4 Tarsius syrichta ENSTSYG00000009295 I 0.812
Q3MHE6_BOVIN Bos taurus ENSBTAG00000012495 I 0.812
SF3B4 Tetraodon nigroviridis ENSTNIG00000009156 I 0.812
LOC100054350 Equus caballus ENSECAG00000024737 I 0.812
ENSFCAG00000010106 Felis catus ENSFCAG00000010106 I 0.812
SF3B4 Homo sapiens ENSG00000143368 I 0.812
sf3b4 Danio rerio ENSDARG00000018574 D 0.812
ENSCPOG00000008267 Cavia porcellus ENSCPOG00000008267 I 0.812
A6MKC5_CALJA Callithrix jacchus ENSCJAG00000000793 I 0.812
ENSMODG00000018767 Monodelphis domestica ENSMODG00000018767 I 0.812
ENSCAFG00000011617 Canis familiaris ENSCAFG00000011617 I 0.812
SF3B4 Gallus gallus ENSGALG00000013352 I 0.812
SF3B4 Gasterosteus aculeatus ENSGACG00000003819 I 0.812
ENSMGAG00000000653 Meleagris gallopavo ENSMGAG00000000653 I 0.812
SF3B4 Microcebus murinus ENSMICG00000000296 I 0.812
ENSMLUG00000010789 Myotis lucifugus ENSMLUG00000010789 I 0.812
ENSLAFG00000008531 Loxodonta africana ENSLAFG00000008531 I 0.812
SF3B4 Macaca mulatta ENSMMUG00000007256 I 0.812
SF3B4 Gorilla gorilla ENSGGOG00000004761 I 0.812
AAH77458 Xenopus laevis AAH77458 I 0.806
AAH45264 Xenopus laevis AAH45264 I 0.806
ENSPCAG00000000392 Procavia capensis ENSPCAG00000000392 I 0.806
ENSBTAG00000012793 Bos taurus ENSBTAG00000012793 I 0.792
ENSSTOG00000006570 Spermophilus tridecemlineatus ENSSTOG00000006570 I 0.788
estExt_fgenesh2_pm.C_9540001 Branchiostoma floridae estExt_fgenesh2_pm.C_9540001 I 0.778
fgenesh2_pg.scaffold_36000101 Branchiostoma floridae fgenesh2_pg.scaffold_36000101 I 0.778
ENSMEUG00000003272 Macropus eugenii ENSMEUG00000003272 I 0.764
ENSCAFG00000005753 Canis familiaris ENSCAFG00000005753 I 0.743
ISCW010601 Ixodes scapularis ISCW010601 I 0.743
XP_784135.2 Strongylocentrotus purpuratus XP_784135.2 I 0.736
XP_001185838.1 Strongylocentrotus purpuratus XP_001185838.1 I 0.736
estExt_Genewise1.C_sca_2060028 Lottia gigantea estExt_Genewise1.C_sca_2060028 I 0.729
e_gw1.1.857.1 Daphnia pulex e_gw1.1.857.1 I 0.729
Smp_067420 Schistosoma mansoni Smp_067420 D 0.715
SNAPOd2T00022637001 Oikopleura dioica SNAPOd2T00022637001 I 0.715
nasonia_NCBI_hmm192414 Nasonia vitripennis nasonia_NCBI_hmm192414 I 0.708
CpipJ_CPIJ014149 Culex pipiens CpipJ_CPIJ014149 I 0.708
CPIJ014149 Culex quinquefasciatus CPIJ014149 I 0.708
AAEL013795 Aedes aegypti AAEL013795 I 0.708
estExt_gwp.C_590193 Nematostella vectensis estExt_gwp.C_590193 I 0.708
AGAP001538 Anopheles gambiae AGAP001538 I 0.701
PHUM263440 Pediculus humanus PHUM263440 I 0.701
GH17589 Drosophila grimshawi FBgn0125059 I 0.701
GI16317 Drosophila mojavensis FBgn0139065 I 0.701
GJ15655 Drosophila virilis FBgn0202845 I 0.701
XP_002157695.1 Hydra magnipapillata XP_002157695.1 I 0.701
amel4_ncbi_hmm1889 Apis mellifera amel4_ncbi_hmm1889 I 0.701