ISCW010601 (Ixodes scapularis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ISCW010601 T44850_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
sf3b4
M195_0.6 		Danio rerio CAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00224 		0.910
Smp_067420
M201_0.6 		Schistosoma mansoni DWWUUUU RNAcompete
Ray et al.(2013)
RNCMPT00232 		0.909
sap-49
M261_0.6 		Caenorhabditis elegans CGUGUGAG SELEX
Cook et al.(2011)
145_9163526 		0.860
estExt_gwp_gw1.C_700168
M205_0.6 		Physcomitrella patens WUGGAG RNAcompete
Ray et al.(2013)
RNCMPT00237 		0.790
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ISCW010601-PA RRM 15 85
ISCW010601-PA RRM 102 173

Links

Other RRM family RBPs
Other Ixodes scapularis RBPs

130 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SF3B4 Gallus gallus ENSGALG00000013352 I 0.923
SF3B4 Gasterosteus aculeatus ENSGACG00000003819 I 0.923
SF3B4 Homo sapiens ENSG00000143368 I 0.923
SF3B4 Gorilla gorilla ENSGGOG00000004761 I 0.923
ENSLAFG00000008531 Loxodonta africana ENSLAFG00000008531 I 0.923
SF3B4 Macaca mulatta ENSMMUG00000007256 I 0.923
SF3B4 Microcebus murinus ENSMICG00000000296 I 0.923
ENSMGAG00000000653 Meleagris gallopavo ENSMGAG00000000653 I 0.923
ENSFCAG00000010106 Felis catus ENSFCAG00000010106 I 0.923
LOC100054350 Equus caballus ENSECAG00000024737 I 0.923
Ame_R019118 Ailuropoda melanoleuca Ame_R019118 I 0.923
Q3MHE6_BOVIN Bos taurus ENSBTAG00000012495 I 0.923
ENSACAG00000010019 Anolis carolinensis ENSACAG00000010019 I 0.923
ENSCAFG00000011617 Canis familiaris ENSCAFG00000011617 I 0.923
A6MKC5_CALJA Callithrix jacchus ENSCJAG00000000793 I 0.923
sf3b4 Danio rerio ENSDARG00000018574 D 0.923
ENSCPOG00000008267 Cavia porcellus ENSCPOG00000008267 I 0.923
ENSMODG00000018767 Monodelphis domestica ENSMODG00000018767 I 0.923
ENSMLUG00000010789 Myotis lucifugus ENSMLUG00000010789 I 0.923
SF3B4 Tetraodon nigroviridis ENSTNIG00000009156 I 0.923
SF3B4 Taeniopygia guttata ENSTGUG00000004470 I 0.923
Sf3b4 Mus musculus ENSMUSG00000068856 I 0.923
SF3B4 Takifugu rubripes ENSTRUG00000004516 I 0.923
SF3B4 Tarsius syrichta ENSTSYG00000009295 I 0.923
sf3b4 Xenopus tropicalis ENSXETG00000011038 I 0.923
ENSVPAG00000008152 Vicugna pacos ENSVPAG00000008152 I 0.923
ENSTTRG00000005217 Tursiops truncatus ENSTTRG00000005217 I 0.923
Sf3b4 Rattus norvegicus ENSRNOG00000021181 I 0.923
ENSSSCG00000006665 Sus scrofa ENSSSCG00000006665 I 0.923
SF3B4 Otolemur garnettii ENSOGAG00000006265 I 0.923
ENSPVAG00000014171 Pteropus vampyrus ENSPVAG00000014171 I 0.923
ENSOPRG00000010808 Ochotona princeps ENSOPRG00000010808 I 0.923
ENSOCUG00000004614 Oryctolagus cuniculus ENSOCUG00000004614 I 0.923
SF3B4 Oryzias latipes ENSORLG00000003062 I 0.923
SF3B4 Pan troglodytes ENSPTRG00000001243 I 0.923
CpipJ_CPIJ014149 Culex pipiens CpipJ_CPIJ014149 I 0.916
AAH45264 Xenopus laevis AAH45264 I 0.916
AAH77458 Xenopus laevis AAH77458 I 0.916
AAEL013795 Aedes aegypti AAEL013795 I 0.916
estExt_Genewise1.C_sca_2060028 Lottia gigantea estExt_Genewise1.C_sca_2060028 I 0.916
CPIJ014149 Culex quinquefasciatus CPIJ014149 I 0.916
ENSPCAG00000000392 Procavia capensis ENSPCAG00000000392 I 0.916
Smp_067420 Schistosoma mansoni Smp_067420 D 0.909
DGIL_AUG5s13542g6t1 Acyrtosiphon pisum DGIL_AUG5s13542g6t1 I 0.909
nasonia_NCBI_hmm192414 Nasonia vitripennis nasonia_NCBI_hmm192414 I 0.902
fgenesh2_pg.scaffold_36000101 Branchiostoma floridae fgenesh2_pg.scaffold_36000101 I 0.902
AGAP001538 Anopheles gambiae AGAP001538 I 0.902
ENSBTAG00000012793 Bos taurus ENSBTAG00000012793 I 0.902
estExt_fgenesh2_pm.C_9540001 Branchiostoma floridae estExt_fgenesh2_pm.C_9540001 I 0.902
estExt_Genewise1.C_230076 Capitella teleta estExt_Genewise1.C_230076 I 0.902
GI16317 Drosophila mojavensis FBgn0139065 I 0.895
GH17589 Drosophila grimshawi FBgn0125059 I 0.895
GJ15655 Drosophila virilis FBgn0202845 I 0.895
ENSSTOG00000006570 Spermophilus tridecemlineatus ENSSTOG00000006570 I 0.890
GF20385 Drosophila ananassae FBgn0097392 I 0.888
amel4_ncbi_hmm1889 Apis mellifera amel4_ncbi_hmm1889 I 0.888
GG19577 Drosophila erecta FBgn0111779 I 0.888
GK19717 Drosophila willistoni FBgn0221715 I 0.888
GE16738 Drosophila yakuba FBgn0234234 I 0.888
e_gw1.1.857.1 Daphnia pulex e_gw1.1.857.1 I 0.888
estExt_gwp.C_590193 Nematostella vectensis estExt_gwp.C_590193 I 0.881
Spx Drosophila melanogaster FBgn0015818 I 0.881
GM12470 Drosophila sechellia FBgn0167407 I 0.881
GA17684-RA Drosophila pseudoobscura FBgn0077694 I 0.881
99199 Helobdella robusta 99199 I 0.881
GL21313 Drosophila persimilis FBgn0158906 I 0.881
PHUM263440 Pediculus humanus PHUM263440 I 0.881
XP_784135.2 Strongylocentrotus purpuratus XP_784135.2 I 0.874
XP_001185838.1 Strongylocentrotus purpuratus XP_001185838.1 I 0.874
ENSMEUG00000003272 Macropus eugenii ENSMEUG00000003272 I 0.867
e_gw1.6.938.1 Trichoplax adhaerens e_gw1.6.938.1 I 0.867
CRE01639 Caenorhabditis remanei CRE01639 I 0.860
CBN06124 Caenorhabditis brenneri CBN06124 I 0.860
ENSCAFG00000005753 Canis familiaris ENSCAFG00000005753 I 0.860
sap-49 Caenorhabditis elegans C08B11.5 D 0.860
WUBG_01785 Wuchereria bancrofti WUBG_01785 I 0.860
LOAG_01189 Loa loa LOAG_01189 I 0.860
Bm1_43460 Brugia malayi Bm1_43460 I 0.853
CBG13349 Caenorhabditis briggsae CBG13349 I 0.846
CJA19238 Caenorhabditis japonica CJA19238 I 0.839
SNAPOd2T00022637001 Oikopleura dioica SNAPOd2T00022637001 I 0.832
PTSG_00878 Salpingoeca rosetta PTSG_00878 I 0.825
Aqu1.214461 Amphimedon queenslandica Aqu1.214461 I 0.818
Aqu1.212443 Amphimedon queenslandica Aqu1.212443 I 0.818
XP_002157695.1 Hydra magnipapillata XP_002157695.1 I 0.811
PK08238.1 Cannabis sativa PK08238.1 I 0.811
MDP0000131129 Malus x domestica MDP0000131129 I 0.804
MDP0000320945 Malus x domestica MDP0000320945 I 0.804
Cucsa.251850 Cucumis sativus Cucsa.251850 I 0.804
cassava31033.valid.m1 Manihot esculenta cassava31033.valid.m1 I 0.797
Medtr3g087340 Medicago truncatula Medtr3g087340 I 0.797
30183.m001303 Ricinus communis 30183.m001303 I 0.797
Glyma09g00310.1 Glycine max Glyma09g00310.1 I 0.797
B9HEU6_POPTR Populus trichocarpa POPTR_0007s12570 I 0.797
GSVIVG00018991001 Vitis vinifera GSVIVG00018991001 I 0.790
Minc01580 Meloidogyne incognita Minc01580 I 0.790
estExt_gwp_gw1.C_700168 Physcomitrella patens estExt_gwp_gw1.C_700168 D 0.790
Minc02568 Meloidogyne incognita Minc02568 I 0.790
ppa007508m Prunus persica ppa007508m I 0.790
Minc12926 Meloidogyne incognita Minc12926 I 0.790
SPPG_04182 Spizellomyces punctatus SPPG_04182 I 0.783
Glyma12g36950.1 Glycine max Glyma12g36950.1 I 0.783
BGIOSIBCE032328 Oryza indica BGIOSIBCE032328 I 0.776
BRADI3G27920 Brachypodium distachyon BRADI3G27920 I 0.776
GRMZM2G170699 Zea mays GRMZM2G170699 I 0.776
SB01G020190 Sorghum bicolor Sb01g020190 I 0.776
LOC_Os10g31900 Oryza sativa LOC_Os10g31900 I 0.776
FER_chlre3.3.376.1.5 Chlamydomonas reinhardtii FER_chlre3.3.376.1.5 I 0.776
GRMZM2G102639 Zea mays GRMZM2G102639 I 0.769
emb2444 Arabidopsis thaliana AT2G18510-TAIR-G I 0.762
XM_002886132.1 Arabidopsis lyrata fgenesh2_kg.3__3460__AT2G18510.1 I 0.755
estExt_fgenesh1_pg.C_220114 Monosiga brevicollis estExt_fgenesh1_pg.C_220114 I 0.755
estExt_Genemark1.C_60101 Coccomyxa C 169 estExt_Genemark1.C_60101 I 0.755
estExt_Genewise1.C_60440 Chlorella vulgaris estExt_Genewise1.C_60440 I 0.755
AMAG_03157 Allomyces macrogynus AMAG_03157 I 0.748
AMAG_10429 Allomyces macrogynus AMAG_10429 I 0.748
ENSBTAG00000026365 Bos taurus ENSBTAG00000026365 I 0.743
CAOG_06059 Capsaspora owczarzaki CAOG_06059 I 0.741
e_gw1.3.432.1 Micromonas pusilla e_gw1.3.432.1 I 0.734
gw1.3.260.1 Chlorella NC64A gw1.3.260.1 I 0.727
gw1.5.900.1 Ostreococcus RCC809 gw1.5.900.1 I 0.720
estExt_Genewise1Plus.C_330054 Phycomyces blakesleeanus estExt_Genewise1Plus.C_330054 I 0.720
e_gwEuk.5.259.1 Ostreococcus lucimarinus e_gwEuk.5.259.1 I 0.720
gw1.05.00.253.1 Ostreococcus tauri gw1.05.00.253.1 I 0.713
estExtDG_fgenesh_newKGs_kg.C_520059 Emiliania huxleyi estExtDG_fgenesh_newKGs_kg.C_520059 I 0.713
e_gw1.2.2306.1 Schizophyllum commune e_gw1.2.2306.1 I 0.713
RO3G_10200 Rhizopus oryzae RO3G_10200 I 0.706
RO3G_15452 Rhizopus oryzae RO3G_15452 I 0.706
estExt_Genewise1Plus.C_920074 Postia placenta estExt_Genewise1Plus.C_920074 I 0.706
estExt_Genewise1Plus.C_20198 Mucor circinelloides estExt_Genewise1Plus.C_20198 I 0.706