SNAPOd2T00022637001 (Oikopleura dioica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 SNAPOd2T00022637001 T48445_0.6 Genoscope (2013-Jan-11)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
sf3b4
M195_0.6 		Danio rerio CAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00224 		0.854
Smp_067420
M201_0.6 		Schistosoma mansoni DWWUUUU RNAcompete
Ray et al.(2013)
RNCMPT00232 		0.797
sap-49
M261_0.6 		Caenorhabditis elegans CGUGUGAG SELEX
Cook et al.(2011)
145_9163526 		0.769
estExt_gwp_gw1.C_700168
M205_0.6 		Physcomitrella patens WUGGAG RNAcompete
Ray et al.(2013)
RNCMPT00237 		0.769
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
SNAPOd2T00022637001 RRM 13 83
SNAPOd2T00022637001 RRM 100 171

Links

Other RRM family RBPs
Other Oikopleura dioica RBPs

121 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAH77458 Xenopus laevis AAH77458 I 0.874
AAH45264 Xenopus laevis AAH45264 I 0.874
SF3B4 Oryzias latipes ENSORLG00000003062 I 0.867
SF3B4 Pan troglodytes ENSPTRG00000001243 I 0.867
ENSOPRG00000010808 Ochotona princeps ENSOPRG00000010808 I 0.867
ENSOCUG00000004614 Oryctolagus cuniculus ENSOCUG00000004614 I 0.867
Sf3b4 Mus musculus ENSMUSG00000068856 I 0.867
ENSPVAG00000014171 Pteropus vampyrus ENSPVAG00000014171 I 0.867
SF3B4 Otolemur garnettii ENSOGAG00000006265 I 0.867
ENSSSCG00000006665 Sus scrofa ENSSSCG00000006665 I 0.867
SF3B4 Macaca mulatta ENSMMUG00000007256 I 0.867
SF3B4 Tarsius syrichta ENSTSYG00000009295 I 0.867
SF3B4 Tetraodon nigroviridis ENSTNIG00000009156 I 0.867
SF3B4 Taeniopygia guttata ENSTGUG00000004470 I 0.867
ENSACAG00000010019 Anolis carolinensis ENSACAG00000010019 I 0.867
Sf3b4 Rattus norvegicus ENSRNOG00000021181 I 0.867
Q3MHE6_BOVIN Bos taurus ENSBTAG00000012495 I 0.867
SF3B4 Gorilla gorilla ENSGGOG00000004761 I 0.867
SF3B4 Gallus gallus ENSGALG00000013352 I 0.867
SF3B4 Gasterosteus aculeatus ENSGACG00000003819 I 0.867
ENSLAFG00000008531 Loxodonta africana ENSLAFG00000008531 I 0.867
ENSMGAG00000000653 Meleagris gallopavo ENSMGAG00000000653 I 0.867
ENSMLUG00000010789 Myotis lucifugus ENSMLUG00000010789 I 0.867
SF3B4 Microcebus murinus ENSMICG00000000296 I 0.867
SF3B4 Homo sapiens ENSG00000143368 I 0.867
ENSFCAG00000010106 Felis catus ENSFCAG00000010106 I 0.867
ENSCAFG00000011617 Canis familiaris ENSCAFG00000011617 I 0.867
ENSMODG00000018767 Monodelphis domestica ENSMODG00000018767 I 0.867
A6MKC5_CALJA Callithrix jacchus ENSCJAG00000000793 I 0.867
ENSCPOG00000008267 Cavia porcellus ENSCPOG00000008267 I 0.867
LOC100054350 Equus caballus ENSECAG00000024737 I 0.867
sf3b4 Danio rerio ENSDARG00000018574 D 0.867
ENSTTRG00000005217 Tursiops truncatus ENSTTRG00000005217 I 0.867
SF3B4 Takifugu rubripes ENSTRUG00000004516 I 0.867
ENSVPAG00000008152 Vicugna pacos ENSVPAG00000008152 I 0.867
sf3b4 Xenopus tropicalis ENSXETG00000011038 I 0.867
Ame_R019118 Ailuropoda melanoleuca Ame_R019118 I 0.867
estExt_fgenesh2_pm.C_9540001 Branchiostoma floridae estExt_fgenesh2_pm.C_9540001 I 0.860
estExt_Genewise1.C_sca_2060028 Lottia gigantea estExt_Genewise1.C_sca_2060028 I 0.860
ENSPCAG00000000392 Procavia capensis ENSPCAG00000000392 I 0.860
fgenesh2_pg.scaffold_36000101 Branchiostoma floridae fgenesh2_pg.scaffold_36000101 I 0.860
99199 Helobdella robusta 99199 I 0.860
XP_784135.2 Strongylocentrotus purpuratus XP_784135.2 I 0.860
XP_001185838.1 Strongylocentrotus purpuratus XP_001185838.1 I 0.860
e_gw1.1.857.1 Daphnia pulex e_gw1.1.857.1 I 0.846
ENSBTAG00000012793 Bos taurus ENSBTAG00000012793 I 0.846
AGAP001538 Anopheles gambiae AGAP001538 I 0.839
ENSSTOG00000006570 Spermophilus tridecemlineatus ENSSTOG00000006570 I 0.834
CPIJ014149 Culex quinquefasciatus CPIJ014149 I 0.832
AAEL013795 Aedes aegypti AAEL013795 I 0.832
ISCW010601 Ixodes scapularis ISCW010601 I 0.832
CpipJ_CPIJ014149 Culex pipiens CpipJ_CPIJ014149 I 0.832
DGIL_AUG5s13542g6t1 Acyrtosiphon pisum DGIL_AUG5s13542g6t1 I 0.832
GI16317 Drosophila mojavensis FBgn0139065 I 0.825
GJ15655 Drosophila virilis FBgn0202845 I 0.825
amel4_ncbi_hmm1889 Apis mellifera amel4_ncbi_hmm1889 I 0.825
estExt_gwp.C_590193 Nematostella vectensis estExt_gwp.C_590193 I 0.825
GH17589 Drosophila grimshawi FBgn0125059 I 0.825
nasonia_NCBI_hmm192414 Nasonia vitripennis nasonia_NCBI_hmm192414 I 0.825
PHUM263440 Pediculus humanus PHUM263440 I 0.818
GE16738 Drosophila yakuba FBgn0234234 I 0.818
GK19717 Drosophila willistoni FBgn0221715 I 0.818
GL21313 Drosophila persimilis FBgn0158906 I 0.818
GF20385 Drosophila ananassae FBgn0097392 I 0.818
GA17684-RA Drosophila pseudoobscura FBgn0077694 I 0.818
GG19577 Drosophila erecta FBgn0111779 I 0.818
GM12470 Drosophila sechellia FBgn0167407 I 0.811
Spx Drosophila melanogaster FBgn0015818 I 0.811
e_gw1.6.938.1 Trichoplax adhaerens e_gw1.6.938.1 I 0.804
ENSCAFG00000005753 Canis familiaris ENSCAFG00000005753 I 0.804
ENSMEUG00000003272 Macropus eugenii ENSMEUG00000003272 I 0.804
XP_002157695.1 Hydra magnipapillata XP_002157695.1 I 0.797
estExt_Genewise1.C_230076 Capitella teleta estExt_Genewise1.C_230076 I 0.797
Smp_067420 Schistosoma mansoni Smp_067420 D 0.797
PK08238.1 Cannabis sativa PK08238.1 I 0.783
Aqu1.214461 Amphimedon queenslandica Aqu1.214461 I 0.783
cassava31033.valid.m1 Manihot esculenta cassava31033.valid.m1 I 0.783
Aqu1.212443 Amphimedon queenslandica Aqu1.212443 I 0.783
MDP0000131129 Malus x domestica MDP0000131129 I 0.776
MDP0000320945 Malus x domestica MDP0000320945 I 0.776
Cucsa.251850 Cucumis sativus Cucsa.251850 I 0.776
GSVIVG00018991001 Vitis vinifera GSVIVG00018991001 I 0.776
B9HEU6_POPTR Populus trichocarpa POPTR_0007s12570 I 0.769
CJA19238 Caenorhabditis japonica CJA19238 I 0.769
sap-49 Caenorhabditis elegans C08B11.5 D 0.769
Medtr3g087340 Medicago truncatula Medtr3g087340 I 0.769
PTSG_00878 Salpingoeca rosetta PTSG_00878 I 0.769
estExt_gwp_gw1.C_700168 Physcomitrella patens estExt_gwp_gw1.C_700168 D 0.769
Glyma09g00310.1 Glycine max Glyma09g00310.1 I 0.769
CBN06124 Caenorhabditis brenneri CBN06124 I 0.769
30183.m001303 Ricinus communis 30183.m001303 I 0.769
CRE01639 Caenorhabditis remanei CRE01639 I 0.769
Minc12926 Meloidogyne incognita Minc12926 I 0.762
Minc02568 Meloidogyne incognita Minc02568 I 0.762
estExt_Genemark1.C_60101 Coccomyxa C 169 estExt_Genemark1.C_60101 I 0.762
ppa007508m Prunus persica ppa007508m I 0.762
Glyma12g36950.1 Glycine max Glyma12g36950.1 I 0.762
estExt_Genewise1.C_60440 Chlorella vulgaris estExt_Genewise1.C_60440 I 0.762
Minc01580 Meloidogyne incognita Minc01580 I 0.762
LOC_Os10g31900 Oryza sativa LOC_Os10g31900 I 0.755
CBG13349 Caenorhabditis briggsae CBG13349 I 0.755
BGIOSIBCE032328 Oryza indica BGIOSIBCE032328 I 0.755
BRADI3G27920 Brachypodium distachyon BRADI3G27920 I 0.755
FER_chlre3.3.376.1.5 Chlamydomonas reinhardtii FER_chlre3.3.376.1.5 I 0.755
SB01G020190 Sorghum bicolor Sb01g020190 I 0.755
GRMZM2G170699 Zea mays GRMZM2G170699 I 0.755
GRMZM2G102639 Zea mays GRMZM2G102639 I 0.748
emb2444 Arabidopsis thaliana AT2G18510-TAIR-G I 0.748
LOAG_01189 Loa loa LOAG_01189 I 0.748
WUBG_01785 Wuchereria bancrofti WUBG_01785 I 0.748
estExt_fgenesh1_pg.C_220114 Monosiga brevicollis estExt_fgenesh1_pg.C_220114 I 0.741
e_gw1.3.432.1 Micromonas pusilla e_gw1.3.432.1 I 0.741
e_gwEuk.5.259.1 Ostreococcus lucimarinus e_gwEuk.5.259.1 I 0.741
XM_002886132.1 Arabidopsis lyrata fgenesh2_kg.3__3460__AT2G18510.1 I 0.741
gw1.5.900.1 Ostreococcus RCC809 gw1.5.900.1 I 0.741
gw1.05.00.253.1 Ostreococcus tauri gw1.05.00.253.1 I 0.741
SPPG_04182 Spizellomyces punctatus SPPG_04182 I 0.741
Bm1_43460 Brugia malayi Bm1_43460 I 0.741
gw1.3.260.1 Chlorella NC64A gw1.3.260.1 I 0.720
ENSBTAG00000026365 Bos taurus ENSBTAG00000026365 I 0.715
RO3G_10200 Rhizopus oryzae RO3G_10200 I 0.713