CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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amel4_ncbi_hmm1889
(
Apis mellifera
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
amel4_ncbi_hmm1889
T31870_0.6
DroSpeGe (2008-Jul-18)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
Smp_067420
M201_0.6
Schistosoma mansoni
DWWUUUU
RNAcompete
Ray et al.(2013)
RNCMPT00232
0.874
sf3b4
M195_0.6
Danio rerio
CAAAAG
RNAcompete
Ray et al.(2013)
RNCMPT00224
0.868
sap-49
M261_0.6
Caenorhabditis elegans
CGUGUGAG
SELEX
Cook et al.(2011)
145_9163526
0.818
estExt_gwp_gw1.C_700168
M205_0.6
Physcomitrella patens
WUGGAG
RNAcompete
Ray et al.(2013)
RNCMPT00237
0.755
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
amel4_ncbi_hmm1889
RRM
15
85
IYVGGLDDKVTESLMWELFVQSGPVVNVHMPKDRVTQMHQGYGFVEFMGEEDADYAIKIMNMIKLYGKPIR
amel4_ncbi_hmm1889
RRM
102
173
IFIGNLDPEVDEKLLYDTFSAFGVILQTPKIMRDPETGNSKGFAFINFASFDASDASIEAMNGQYLCNRPIS
Links
Other
RRM
family RBPs
Other
Apis mellifera
RBPs
126 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
nasonia_NCBI_hmm192414
Nasonia vitripennis
nasonia_NCBI_hmm192414
I
0.986
PHUM263440
Pediculus humanus
PHUM263440
I
0.972
AGAP001538
Anopheles gambiae
AGAP001538
I
0.944
CPIJ014149
Culex quinquefasciatus
CPIJ014149
I
0.930
CpipJ_CPIJ014149
Culex pipiens
CpipJ_CPIJ014149
I
0.930
AAEL013795
Aedes aegypti
AAEL013795
I
0.930
estExt_Genewise1.C_sca_2060028
Lottia gigantea
estExt_Genewise1.C_sca_2060028
I
0.916
GI16317
Drosophila mojavensis
FBgn0139065
I
0.909
GJ15655
Drosophila virilis
FBgn0202845
I
0.909
GL21313
Drosophila persimilis
FBgn0158906
I
0.909
GA17684-RA
Drosophila pseudoobscura
FBgn0077694
I
0.909
GH17589
Drosophila grimshawi
FBgn0125059
I
0.909
GG19577
Drosophila erecta
FBgn0111779
I
0.902
GF20385
Drosophila ananassae
FBgn0097392
I
0.902
GE16738
Drosophila yakuba
FBgn0234234
I
0.902
fgenesh2_pg.scaffold_36000101
Branchiostoma floridae
fgenesh2_pg.scaffold_36000101
I
0.902
estExt_fgenesh2_pm.C_9540001
Branchiostoma floridae
estExt_fgenesh2_pm.C_9540001
I
0.902
GK19717
Drosophila willistoni
FBgn0221715
I
0.902
Spx
Drosophila melanogaster
FBgn0015818
I
0.895
estExt_Genewise1.C_230076
Capitella teleta
estExt_Genewise1.C_230076
I
0.895
e_gw1.1.857.1
Daphnia pulex
e_gw1.1.857.1
I
0.895
GM12470
Drosophila sechellia
FBgn0167407
I
0.895
ISCW010601
Ixodes scapularis
ISCW010601
I
0.888
estExt_gwp.C_590193
Nematostella vectensis
estExt_gwp.C_590193
I
0.888
SF3B4
Tetraodon nigroviridis
ENSTNIG00000009156
I
0.881
SF3B4
Taeniopygia guttata
ENSTGUG00000004470
I
0.881
ENSPVAG00000014171
Pteropus vampyrus
ENSPVAG00000014171
I
0.881
SF3B4
Pan troglodytes
ENSPTRG00000001243
I
0.881
SF3B4
Takifugu rubripes
ENSTRUG00000004516
I
0.881
ENSSSCG00000006665
Sus scrofa
ENSSSCG00000006665
I
0.881
ENSVPAG00000008152
Vicugna pacos
ENSVPAG00000008152
I
0.881
Q3MHE6_BOVIN
Bos taurus
ENSBTAG00000012495
I
0.881
ENSACAG00000010019
Anolis carolinensis
ENSACAG00000010019
I
0.881
Ame_R019118
Ailuropoda melanoleuca
Ame_R019118
I
0.881
ENSCAFG00000011617
Canis familiaris
ENSCAFG00000011617
I
0.881
sf3b4
Xenopus tropicalis
ENSXETG00000011038
I
0.881
ENSTTRG00000005217
Tursiops truncatus
ENSTTRG00000005217
I
0.881
SF3B4
Oryzias latipes
ENSORLG00000003062
I
0.881
SF3B4
Tarsius syrichta
ENSTSYG00000009295
I
0.881
Sf3b4
Rattus norvegicus
ENSRNOG00000021181
I
0.881
SF3B4
Homo sapiens
ENSG00000143368
I
0.881
SF3B4
Gallus gallus
ENSGALG00000013352
I
0.881
SF3B4
Gorilla gorilla
ENSGGOG00000004761
I
0.881
ENSFCAG00000010106
Felis catus
ENSFCAG00000010106
I
0.881
LOC100054350
Equus caballus
ENSECAG00000024737
I
0.881
A6MKC5_CALJA
Callithrix jacchus
ENSCJAG00000000793
I
0.881
ENSCPOG00000008267
Cavia porcellus
ENSCPOG00000008267
I
0.881
sf3b4
Danio rerio
ENSDARG00000018574
D
0.881
ENSLAFG00000008531
Loxodonta africana
ENSLAFG00000008531
I
0.881
SF3B4
Gasterosteus aculeatus
ENSGACG00000003819
I
0.881
SF3B4
Macaca mulatta
ENSMMUG00000007256
I
0.881
ENSMODG00000018767
Monodelphis domestica
ENSMODG00000018767
I
0.881
Sf3b4
Mus musculus
ENSMUSG00000068856
I
0.881
ENSOCUG00000004614
Oryctolagus cuniculus
ENSOCUG00000004614
I
0.881
SF3B4
Otolemur garnettii
ENSOGAG00000006265
I
0.881
ENSMGAG00000000653
Meleagris gallopavo
ENSMGAG00000000653
I
0.881
SF3B4
Microcebus murinus
ENSMICG00000000296
I
0.881
ENSMLUG00000010789
Myotis lucifugus
ENSMLUG00000010789
I
0.881
ENSOPRG00000010808
Ochotona princeps
ENSOPRG00000010808
I
0.881
Smp_067420
Schistosoma mansoni
Smp_067420
D
0.874
DGIL_AUG5s13542g6t1
Acyrtosiphon pisum
DGIL_AUG5s13542g6t1
I
0.874
AAH45264
Xenopus laevis
AAH45264
I
0.874
ENSPCAG00000000392
Procavia capensis
ENSPCAG00000000392
I
0.874
AAH77458
Xenopus laevis
AAH77458
I
0.874
99199
Helobdella robusta
99199
I
0.874
ENSBTAG00000012793
Bos taurus
ENSBTAG00000012793
I
0.867
e_gw1.6.938.1
Trichoplax adhaerens
e_gw1.6.938.1
I
0.860
XP_001185838.1
Strongylocentrotus purpuratus
XP_001185838.1
I
0.860
XP_784135.2
Strongylocentrotus purpuratus
XP_784135.2
I
0.860
ENSSTOG00000006570
Spermophilus tridecemlineatus
ENSSTOG00000006570
I
0.848
XP_002157695.1
Hydra magnipapillata
XP_002157695.1
I
0.846
WUBG_01785
Wuchereria bancrofti
WUBG_01785
I
0.825
LOAG_01189
Loa loa
LOAG_01189
I
0.825
Aqu1.214461
Amphimedon queenslandica
Aqu1.214461
I
0.825
SNAPOd2T00022637001
Oikopleura dioica
SNAPOd2T00022637001
I
0.825
ENSMEUG00000003272
Macropus eugenii
ENSMEUG00000003272
I
0.825
ENSCAFG00000005753
Canis familiaris
ENSCAFG00000005753
I
0.825
Aqu1.212443
Amphimedon queenslandica
Aqu1.212443
I
0.825
CBN06124
Caenorhabditis brenneri
CBN06124
I
0.818
sap-49
Caenorhabditis elegans
C08B11.5
D
0.818
Bm1_43460
Brugia malayi
Bm1_43460
I
0.818
CRE01639
Caenorhabditis remanei
CRE01639
I
0.811
CJA19238
Caenorhabditis japonica
CJA19238
I
0.811
CBG13349
Caenorhabditis briggsae
CBG13349
I
0.804
PTSG_00878
Salpingoeca rosetta
PTSG_00878
I
0.804
30183.m001303
Ricinus communis
30183.m001303
I
0.797
Minc01580
Meloidogyne incognita
Minc01580
I
0.790
Minc12926
Meloidogyne incognita
Minc12926
I
0.790
Minc02568
Meloidogyne incognita
Minc02568
I
0.790
cassava31033.valid.m1
Manihot esculenta
cassava31033.valid.m1
I
0.783
PK08238.1
Cannabis sativa
PK08238.1
I
0.783
B9HEU6_POPTR
Populus trichocarpa
POPTR_0007s12570
I
0.783
MDP0000131129
Malus x domestica
MDP0000131129
I
0.776
MDP0000320945
Malus x domestica
MDP0000320945
I
0.776
ppa007508m
Prunus persica
ppa007508m
I
0.776
Glyma12g36950.1
Glycine max
Glyma12g36950.1
I
0.776
Cucsa.251850
Cucumis sativus
Cucsa.251850
I
0.776
GSVIVG00018991001
Vitis vinifera
GSVIVG00018991001
I
0.776
estExt_Genemark1.C_60101
Coccomyxa C 169
estExt_Genemark1.C_60101
I
0.769
estExt_Genewise1.C_60440
Chlorella vulgaris
estExt_Genewise1.C_60440
I
0.769
LOC_Os10g31900
Oryza sativa
LOC_Os10g31900
I
0.769
Medtr3g087340
Medicago truncatula
Medtr3g087340
I
0.769
Glyma09g00310.1
Glycine max
Glyma09g00310.1
I
0.769
SB01G020190
Sorghum bicolor
Sb01g020190
I
0.769
BRADI3G27920
Brachypodium distachyon
BRADI3G27920
I
0.769
BGIOSIBCE032328
Oryza indica
BGIOSIBCE032328
I
0.769
GRMZM2G170699
Zea mays
GRMZM2G170699
I
0.769
estExt_fgenesh1_pg.C_220114
Monosiga brevicollis
estExt_fgenesh1_pg.C_220114
I
0.762
FER_chlre3.3.376.1.5
Chlamydomonas reinhardtii
FER_chlre3.3.376.1.5
I
0.762
GRMZM2G102639
Zea mays
GRMZM2G102639
I
0.762
SPPG_04182
Spizellomyces punctatus
SPPG_04182
I
0.755
estExt_gwp_gw1.C_700168
Physcomitrella patens
estExt_gwp_gw1.C_700168
D
0.755
estExtDG_fgenesh_newKGs_kg.C_520059
Emiliania huxleyi
estExtDG_fgenesh_newKGs_kg.C_520059
I
0.748
AMAG_03157
Allomyces macrogynus
AMAG_03157
I
0.734
AMAG_10429
Allomyces macrogynus
AMAG_10429
I
0.734
gw1.3.260.1
Chlorella NC64A
gw1.3.260.1
I
0.734
emb2444
Arabidopsis thaliana
AT2G18510-TAIR-G
I
0.734
e_gw1.3.432.1
Micromonas pusilla
e_gw1.3.432.1
I
0.727
CAOG_06059
Capsaspora owczarzaki
CAOG_06059
I
0.727
estExt_Genewise1Plus.C_20198
Mucor circinelloides
estExt_Genewise1Plus.C_20198
I
0.727
XM_002886132.1
Arabidopsis lyrata
fgenesh2_kg.3__3460__AT2G18510.1
I
0.727
gw1.05.00.253.1
Ostreococcus tauri
gw1.05.00.253.1
I
0.720
estExt_Genewise1Plus.C_330054
Phycomyces blakesleeanus
estExt_Genewise1Plus.C_330054
I
0.713
gw1.5.900.1
Ostreococcus RCC809
gw1.5.900.1
I
0.713
e_gwEuk.5.259.1
Ostreococcus lucimarinus
e_gwEuk.5.259.1
I
0.706
ENSBTAG00000026365
Bos taurus
ENSBTAG00000026365
I
0.701