ENSCJAG00000034783 (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000034783 T35730_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.746
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.746
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.746
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.725
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000050874 RRM 1 65
ENSCJAP00000050874 RRM 87 156

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

44 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSCAFG00000008379 Canis familiaris ENSCAFG00000008379 I 0.737
ENSPPYG00000003855 Pongo pygmaeus ENSPPYG00000003855 I 0.734
ENSMMUG00000005750 Macaca mulatta ENSMMUG00000005750 I 0.721
ENSCAFG00000006663 Canis familiaris ENSCAFG00000006663 I 0.718
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.711
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.708
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.707
ENSOGAG00000017179 Otolemur garnettii ENSOGAG00000017179 I 0.707
ENSCJAG00000005407 Callithrix jacchus ENSCJAG00000005407 I 0.704
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.703
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.703
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.703
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.703
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.703
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.703
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.703
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.703
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.703
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.703
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.703
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.703
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.703
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.703
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.703
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.703
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.703
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.703
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.703
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.703
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.703
HNRNPA1 Homo sapiens ENSG00000135486 D 0.703
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.703
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.703
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.703
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.703
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.703
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.703
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.703
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.703
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.703
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.703
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.703
ENSCAFG00000006036 Canis familiaris ENSCAFG00000006036 I 0.700
ENSMMUG00000004528 Macaca mulatta ENSMMUG00000004528 I 0.700