ENSCSAVG00000006813 (Ciona savignyi)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCSAVG00000006813 T35991_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
U2AF2
M077_0.6 		Homo sapiens UUUUUYC RNAcompete
Ray et al.(2013)
RNCMPT00079 		0.775
U2af50
M078_0.6 		Drosophila melanogaster UUUUUYY RNAcompete
Ray et al.(2013)
RNCMPT00080 		0.737
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCSAVP00000011610 RRM 159 233
ENSCSAVP00000011610 RRM 269 339
ENSCSAVP00000011610 RRM 400 462
ENSCSAVP00000011611 RRM 144 218
ENSCSAVP00000011611 RRM 254 324
ENSCSAVP00000011611 RRM 385 447
ENSCSAVP00000011612 RRM 138 212
ENSCSAVP00000011612 RRM 248 318
ENSCSAVP00000011612 RRM 379 441

Links

Other RRM family RBPs
Other Ciona savignyi RBPs

50 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSCING00000003455 Ciona intestinalis ENSCING00000003455 I 0.948
U2AF2 Tetraodon nigroviridis ENSTNIG00000008106 I 0.775
LOC690372 Rattus norvegicus ENSRNOG00000015914 I 0.775
U2AF2 Tursiops truncatus ENSTTRG00000000987 I 0.775
U2AF2 Anolis carolinensis ENSACAG00000015489 I 0.775
U2af2 Mus musculus ENSMUSG00000030435 I 0.775
Ame_R015025 Ailuropoda melanoleuca Ame_R015025 I 0.775
U2AF2 Cavia porcellus ENSCPOG00000001582 I 0.775
U2AF2 Homo sapiens ENSG00000063244 D 0.775
ENSMMUG00000004810 Macaca mulatta ENSMMUG00000004810 I 0.775
U2AF2 Gasterosteus aculeatus ENSGACG00000010632 I 0.775
ENSLAFG00000018056 Loxodonta africana ENSLAFG00000018056 I 0.775
LOC100050729 Equus caballus ENSECAG00000010110 I 0.775
U2AF2 Canis familiaris ENSCAFG00000002551 I 0.770
Q24JZ8_BOVIN Bos taurus ENSBTAG00000002830 I 0.770
AAH44032 Xenopus laevis AAH44032 I 0.770
u2af2 Xenopus tropicalis ENSXETG00000019128 I 0.770
U2AF2 Pteropus vampyrus ENSPVAG00000004540 I 0.770
U2AF2 Oryzias latipes ENSORLG00000011545 I 0.770
U2AF2 Takifugu rubripes ENSTRUG00000005514 I 0.770
u2af2a Danio rerio ENSDARG00000012505 I 0.766
u2af2b Danio rerio ENSDARG00000011740 I 0.761
estExt_Genewise1.C_sca_340148 Lottia gigantea estExt_Genewise1.C_sca_340148 I 0.756
ENSGACG00000014500 Gasterosteus aculeatus ENSGACG00000014500 I 0.749
ENSTRUG00000006885 Takifugu rubripes ENSTRUG00000006885 I 0.746
estExt_Genewise1.C_1170024 Capitella teleta estExt_Genewise1.C_1170024 I 0.737
BGIBMGA007082 Bombyx mori BGIBMGA007082 I 0.737
GE15975 Drosophila yakuba FBgn0233531 I 0.737
GA22177-RA Drosophila pseudoobscura FBgn0082156 I 0.737
GF19596 Drosophila ananassae FBgn0096603 I 0.737
U2af50 Drosophila melanogaster FBgn0005411 D 0.737
GL15893 Drosophila persimilis FBgn0153497 I 0.737
GG19328 Drosophila erecta FBgn0111532 I 0.737
GM13406 Drosophila sechellia FBgn0168337 I 0.737
GK10063 Drosophila willistoni FBgn0212078 I 0.737
GD24494 Drosophila simulans FBgn0195829 I 0.737
CPIJ012850 Culex quinquefasciatus CPIJ012850 I 0.732
nasonia_NCBI_hmm415104 Nasonia vitripennis nasonia_NCBI_hmm415104 I 0.732
CpipJ_CPIJ012850 Culex pipiens CpipJ_CPIJ012850 I 0.732
PHUM460480 Pediculus humanus PHUM460480 I 0.732
AAEL002818 Aedes aegypti AAEL002818 I 0.732
GI14308 Drosophila mojavensis FBgn0137061 I 0.727
GH12033 Drosophila grimshawi FBgn0119512 I 0.727
ENSTNIG00000011257 Tetraodon nigroviridis ENSTNIG00000011257 I 0.725
amel4_ncbi_hmm5234 Apis mellifera amel4_ncbi_hmm5234 I 0.722
DGIL_AUG5s6719g2t1 Acyrtosiphon pisum DGIL_AUG5s6719g2t1 I 0.722
DGIL_AUG5s4302g1t1 Acyrtosiphon pisum DGIL_AUG5s4302g1t1 I 0.722
AGAP002908 Anopheles gambiae AGAP002908 I 0.718
Smp_019690 Schistosoma mansoni Smp_019690 I 0.713