CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PTBP2
(
Dasypus novemcinctus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSDNOG00000017687
T36372_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDNOP00000013716
RRM
58
96
LHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQXXX
ENSDNOP00000013716
RRM
180
232
IIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQGK
ENSDNOP00000013716
RRM
342
407
LLVSNLNEEMVTPQSLFTLFGVYDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIR
ENSDNOP00000013716
RRM
458
522
LHLSNIPPSVAEEDLRTLFANTGGTVKAFKFFQRDHKMALLQMATVEEAIQALIDLHNYNLGENH
Links
Other
RRM
family RBPs
Other
Dasypus novemcinctus
RBPs
32 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PTBP2
Microcebus murinus
ENSMICG00000008543
I
0.861
PTBP2
Loxodonta africana
ENSLAFG00000017343
I
0.852
PTBP2
Oryctolagus cuniculus
ENSOCUG00000017608
I
0.848
PTBP2
Canis familiaris
ENSCAFG00000020080
I
0.848
Ptbp2
Mus musculus
ENSMUSG00000028134
I
0.848
Ame_R002925
Ailuropoda melanoleuca
Ame_R002925
I
0.848
PTBP2
Pan troglodytes
ENSPTRG00000000987
I
0.848
PTBP2
Tursiops truncatus
ENSTTRG00000012904
I
0.848
PTBP2
Tarsius syrichta
ENSTSYG00000002576
I
0.848
PTBP2
Monodelphis domestica
ENSMODG00000004211
I
0.848
PTBP2
Vicugna pacos
ENSVPAG00000002841
I
0.848
PTBP2
Ornithorhynchus anatinus
ENSOANG00000004656
I
0.848
PTBP2
Gorilla gorilla
ENSGGOG00000000659
I
0.848
PTBP2
Cavia porcellus
ENSCPOG00000003762
I
0.848
PTBP2
Homo sapiens
ENSG00000117569
I
0.848
PTBP2
Macaca mulatta
ENSMMUG00000016130
I
0.848
Ptbp2
Rattus norvegicus
ENSRNOG00000010827
I
0.844
ENSPPYG00000001132
Pongo pygmaeus
ENSPPYG00000001132
I
0.844
LOC100057336
Equus caballus
ENSECAG00000015783
I
0.841
Q9YI60_CHICK
Gallus gallus
ENSGALG00000005552
I
0.840
PTBP2
Meleagris gallopavo
ENSMGAG00000007308
I
0.840
PTBP2
Spermophilus tridecemlineatus
ENSSTOG00000011727
I
0.837
PTBP2
Myotis lucifugus
ENSMLUG00000002522
I
0.837
PTBP2
Anolis carolinensis
ENSACAG00000005600
I
0.825
PTBP2
Taeniopygia guttata
ENSTGUG00000005558
I
0.825
PTBP2
Tetraodon nigroviridis
ENSTNIG00000018950
I
0.737
PTBP2
Danio rerio
ENSDARG00000015901
I
0.735
PTBP1
Callithrix jacchus
ENSCJAG00000020162
I
0.723
PTBP2
Oryzias latipes
ENSORLG00000013557
I
0.712
PTBP1
Macaca mulatta
ENSMMUG00000016450
I
0.710
ptbp1
Xenopus tropicalis
ENSXETG00000021661
I
0.704
PTBP2
Gasterosteus aculeatus
ENSGACG00000014892
I
0.700